[Wed Aug 24 18:10:35 2016] >Input file: TM1IIJCGD.pdb >TM segments: A4-31 MAIDEN score = -7.4378 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- V26A-I31A 0.953350362014767 V24A-I29A 0.901875797628925 F20A-V25A 0.840594008118785 V25A-L30A 0.700244315384309 L21A-V26A 0.612051552149301 I22A-V27A 0.538598208970615 L21A-V27A 0.409273947589541 L19A-V24A 0.27646010864865 V7A-A12A 0.270636484480459 L18A-V24A 0.201875821962635 V15A-V24A 0.171881097131832 L23A-G28A 0.160788649774291 T8A-G16A 0.138509177334889 V14A-V24A 0.136506784871027 I22A-I31A 0.119541651956184 F20A-V26A 0.116222697318374 V15A-F20A 0.0907731894679271 V17A-V27A 0.0902378950793237 L18A-I29A 0.0873180729897253 A4A-A12A 0.0676076640997847 A12A-L21A 0.0668849861866132 V17A-L23A 0.0650114075366801 G16A-V24A 0.0589848923670164 L19A-I29A 0.0565290838058874 L19A-G28A 0.056264802905741 V24A-I31A 0.0552771935679477 V25A-I31A 0.0519222177587526 V15A-V25A 0.0492667775270084 V17A-G28A 0.0442138207392444 P6A-T13A 0.0431374567212401 A4A-I11A 0.0417649941273321 L18A-L23A 0.0170301402217872 V24A-L30A 0.0128427350673022 V14A-L19A 0.0115861726579851 T13A-L21A 0.0111229396376702 P6A-V14A 0.00819403671195645 S5A-T13A 0.000854635998432052 A12A-L19A -0.00531871221431413 L18A-G28A -0.00628534929638569 L19A-L30A -0.0251788595799844 T13A-I22A -0.0265250727886324 P6A-I11A -0.031412551072076 G16A-V25A -0.0332939980573852 A4A-T13A -0.03729011609041 G16A-V27A -0.0382046700773637 F20A-L30A -0.043005534461364 T8A-V15A -0.059712924886921 S5A-V14A -0.0648169177864606 F9A-V17A -0.0721209077436704 V7A-V15A -0.0722819768500629 F20A-I31A -0.0727657080012403 V14A-L23A -0.0727782721659747 P6A-V15A -0.0745585777011818 I10A-L19A -0.0774626262953593 F9A-V14A -0.0777920621576804 S5A-I10A -0.0793978832031375 V17A-I22A -0.0827503235765139 F20A-I29A -0.0858298473815493 I11A-L18A -0.0876986909008748 P6A-A12A -0.0886963394615188 V17A-V26A -0.0887288433442981 G16A-V26A -0.0968092983600837 G16A-L23A -0.0979418114838957 L21A-G28A -0.100324723190883 V7A-G16A -0.102313520398127 A12A-F20A -0.105738455267336 V15A-L23A -0.108051578672244 L18A-V26A -0.115296091767936 F20A-G28A -0.115354053222663 F9A-L18A -0.127050375069222 L18A-V27A -0.136729784034753 I11A-F20A -0.143741832383548 T8A-V17A -0.143851760547902 I11A-L19A -0.152839519627134 V7A-T13A -0.154148628724101 F9A-G16A -0.15439343214607 I10A-L18A -0.155770156119659 L21A-I31A -0.161661233604429 A12A-L18A -0.163528261634326 I22A-G28A -0.16717319090713 V14A-I22A -0.169748993544479 I22A-I29A -0.173370481958072 I10A-G16A -0.18168059832632 I11A-G16A -0.181861639551666 L21A-L30A -0.187244061070012 V15A-I22A -0.198378811769598 I10A-V17A -0.199217111920015 S5A-A12A -0.199378891573836 V14A-F20A -0.202756223455546 T8A-V14A -0.213281832589965 T13A-L18A -0.215504012985292 V7A-V14A -0.227121621762175 T13A-F20A -0.229085692398262 T13A-L19A -0.242784676200726 V14A-L21A -0.25391203665705 G16A-I22A -0.256748675714007 S5A-I11A -0.268091565690534 T8A-T13A -0.27307596251868 L23A-I31A -0.291088265269575 I10A-V15A -0.291180781874896 L19A-V26A -0.29132309438997 V17A-V25A -0.310776301584611 A4A-I10A -0.317163334914337 V15A-L21A -0.321447672159401 L19A-V25A -0.323368252453612 V17A-V24A -0.325979785612293 L21A-I29A -0.327718009462295 F20A-V27A -0.330564966086893 G16A-L21A -0.350866071269893 F9A-V15A -0.354024817436104 L23A-I29A -0.375913902966088 L19A-V27A -0.400263258870676 I22A-L30A -0.403765346009618 L18A-V25A -0.404837851185269 A12A-V17A -0.410981900858345 L23A-L30A -0.437995906974145 A4A-F9A -0.453677993128684 I11A-V17A -0.470269862229265