[Wed Aug 24 23:58:55 2016] >Input file: TM2MLHCGG.pdb >TM segments: A5-18_A54-61_A67-75_A108-120 MAIDEN score = 16.9108 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- Q12A-S57A 10 Y60A-I67A 1.31080459499941 V58A-I67A 1.02405666588307 A13A-R55A 0.834660689442845 R75A-V114A 0.803901854238816 P54A-A72A 0.70629783197772 Y71A-L117A 0.662263849058674 Y74A-V114A 0.644853805937635 R75A-S115A 0.641065200887602 V58A-D70A 0.633015865330165 R73A-S116A 0.626447233591964 Y10A-D61A 0.58601130176976 D14A-P54A 0.55657461985419 Y60A-A68A 0.502758392978081 V56A-D70A 0.480807702225391 Y71A-G118A 0.479598692523198 R73A-V114A 0.459469157983338 V58A-A68A 0.452996432378928 S57A-A68A 0.450106148920014 V56A-A72A 0.431665794648443 I67A-S120A 0.400130112837344 S57A-Y71A 0.390762021034936 A13A-V56A 0.389442620709337 Y74A-S116A 0.374215935510096 A72A-A113A 0.351322994889772 D14A-V56A 0.341161368453724 Y10A-S57A 0.334697062061277 D70A-L119A 0.331831248513271 Y10A-V58A 0.316319165249228 G5A-D61A 0.269172383911399 G59A-G118A 0.265393626237465 V11A-Y71A 0.260861754463917 G59A-Y71A 0.255543018479337 D61A-I67A 0.239144847106468 P54A-S116A 0.236261239294899 V56A-Y74A 0.234560594014811 G6A-G59A 0.226365846179999 Y74A-A113A 0.220923593235888 G59A-D70A 0.214406251112319 V11A-V58A 0.208077111092997 A69A-L119A 0.207543520562942 Y74A-F111A 0.196272092450076 R73A-A113A 0.194759889970899 D14A-R55A 0.184151196820198 G5A-Y60A 0.180690598841123 D14A-Y71A 0.16666650426306 R55A-S115A 0.165894292903607 V11A-R55A 0.158446921267898 P54A-S115A 0.158229279966462 R55A-D70A 0.153735044535026 Y10A-Y71A 0.151699335410041 V11A-V56A 0.146938245036596 A72A-H112A 0.146079016034677 A16A-R55A 0.144335882853906 R55A-A68A 0.139392609486745 Y71A-S115A 0.138601866505606 G8A-G59A 0.131810940173001 Q12A-R55A 0.130039443143134 V56A-S115A 0.127273095333601 V11A-G59A 0.12503871007094 P9A-A69A 0.121936291815922 S57A-L117A 0.118159296146552 Y60A-L119A 0.115297965936395 V58A-A72A 0.110628273098094 A68A-G118A 0.107813814577335 R7A-Y60A 0.106491722855284 A68A-S116A 0.103833139112798 A16A-P54A 0.0990798953924892 V56A-S120A 0.09818110013319 G59A-I67A 0.0976097218657475 A113A-G118A 0.0952065168424751 A13A-Y71A 0.0910787604394006 A72A-L119A 0.0910308541860658 V56A-L119A 0.0907331929154838 Y74A-T110A 0.0896701082969509 Y71A-A113A 0.0887124683416589 T110A-S116A 0.085962177900955 A13A-S57A 0.0856774911524676 A113A-L119A 0.0849404340590185 G6A-V11A 0.0844937155470312 Y74A-L117A 0.0802359460342421 A72A-L117A 0.0801441886120191 A69A-S120A 0.080027170024608 R55A-L119A 0.0782720625694249 T110A-S115A 0.0781251385525552 P54A-G118A 0.0772657385064912 R75A-L117A 0.0771762521922512 R55A-S116A 0.0753891673393243 S57A-L119A 0.0746734728784757 R75A-T110A 0.0653427699615591 A72A-S116A 0.0641857327769095 A13A-D70A 0.0633078449876434 F111A-L117A 0.06297264560851 A69A-S115A 0.0619176883819215 V56A-G118A 0.0616070420869965 Y17A-P54A 0.0615960717428958 Y74A-H112A 0.0599740823564083 D61A-A68A 0.0582970669891294 Y74A-G118A 0.0566888599982693 G59A-A68A 0.0555723314376818 R7A-I67A 0.0555722345885914 G59A-L119A 0.0552946480630158 Y71A-V114A 0.0532029973674062 A72A-F111A 0.052525538731131 D61A-S120A 0.051645951282717 A13A-A68A 0.0512416772627979 V11A-D61A 0.0480420202823506 V58A-L117A 0.0447445917099998 V56A-V114A 0.0437746193115842 S57A-I67A 0.042059701039689 Y71A-S120A 0.0403130919030343 V11A-P54A 0.0392204669734881 G8A-S57A 0.0366186250486473 G59A-A69A 0.0364445093217238 P9A-A68A 0.0347683334350046 V58A-S120A 0.0341914655299389 G6A-D61A 0.0312609956992711 A13A-I67A 0.0307331500293797 A13A-A72A 0.028887208455413 L15A-S57A 0.027554006480572 V114A-L119A 0.0258221678900203 D14A-A72A 0.025000300797057 V56A-L117A 0.024579077015737 V11A-S57A 0.0230614255774597 R73A-H112A 0.0194977942257064 P54A-A68A 0.0173394258219064 A68A-L119A 0.0140715811336753 R73A-T110A 0.0133528087229853 A72A-T110A 0.0132927705212267 R73A-G118A 0.0124024903926152 A13A-A69A 0.0117827107697819 D70A-G118A 0.0116333958063999 H112A-L117A 0.0113437854472175 G8A-A68A 0.0108478199702278 F111A-S116A 0.00724282852254254 R55A-R73A 0.00629317630041296 S57A-S116A 0.00460971463367477 A69A-L117A 0.00434968399352087 Q12A-I67A 0.00199096758374662 G6A-Y60A 0.00118088331127986 N108A-A113A 0.000577771411828465 Y17A-R55A -0.00229729292432258 A72A-S115A -0.00229756498377665 Q12A-S120A -0.00331444895317046 I67A-L117A -0.007133115404093 R75A-F111A -0.00735668082303798 P54A-A69A -0.00749535266522372 D14A-G59A -0.00793837554882648 Q12A-L119A -0.00858625471412289 Q12A-V56A -0.00955260038657357 G109A-S115A -0.0124845731898189 Q12A-V58A -0.0132327632039921 P54A-Y71A -0.0161868585508871 D70A-A113A -0.0168806561509154 V56A-A69A -0.0184817556193217 Q12A-D61A -0.0199265279133654 Q12A-Y60A -0.020800890924531 A13A-G59A -0.0220985924019694 D14A-A69A -0.0285567085436815 D61A-A69A -0.0302940650350969 D70A-S115A -0.0322976940831727 Q12A-D70A -0.0371150372001819 Y10A-V56A -0.0374074549281964 A13A-Y60A -0.037529908306366 Y10A-D70A -0.0392030069477375 Q12A-G59A -0.0394444417999082 V58A-A69A -0.0421839054273052 Y60A-D70A -0.0445995975009095 R73A-S115A -0.0460119788434676 R55A-L117A -0.04661223950737 D70A-S120A -0.0483041090981092 D14A-S57A -0.0507191484836991 V11A-D70A -0.0532154797448303 Q12A-A72A -0.0541701842920088 G8A-A69A -0.056916061326028 R75A-A113A -0.0588582121960499 Y71A-L119A -0.0631518163187355 R75A-S116A -0.0643142982142222 V56A-A68A -0.0645610096767903 V11A-S120A -0.0656872550817464 R55A-V114A -0.066213034293348 D14A-V58A -0.0679133476011424 R55A-S120A -0.0713160151027474 V11A-I67A -0.0720500957016661 Q12A-G118A -0.0723685243371248 S57A-R73A -0.0724822272465517 P54A-V114A -0.0741530610084113 Q12A-A69A -0.0746387412655307 P9A-V56A -0.0772770225685642 Y10A-R55A -0.0814625465696688 Y10A-A69A -0.0815642756121533 Y60A-G118A -0.0842258162297336 P9A-D61A -0.0888530663061675 R73A-F111A -0.0897906939979509 P54A-Y74A -0.0967704053307782 V11A-Y60A -0.0980451672084959 P54A-R73A -0.0989123818507469 Y10A-Y60A -0.101327322906358 G8A-I67A -0.101432379352049 V58A-S116A -0.102145491526157 G5A-Y10A -0.102192475452704 G6A-I67A -0.105847102245462 S57A-A72A -0.106016917151419 R73A-L117A -0.109455747074994 A68A-S120A -0.114687701331426 D70A-V114A -0.116269052192736 D14A-A68A -0.116900821025881 R55A-Y74A -0.117232484881297 R55A-G118A -0.117447137841916 G8A-V58A -0.131728681256275 Y10A-A68A -0.131863894576953 A68A-L117A -0.132334359407642 A69A-G118A -0.135805469032035 G109A-V114A -0.135865242648511 D14A-D70A -0.137321804488494 D70A-L117A -0.137529312469433 V11A-A68A -0.14274897319002 D70A-S116A -0.142946055795667 S57A-G118A -0.143372944943793 S57A-S120A -0.148079698651053 A72A-G118A -0.149692114814856 Y10A-G59A -0.149961455424248 G59A-S120A -0.15165947001716 P54A-L117A -0.153002725693631 V11A-A69A -0.154122630697948 Y10A-S120A -0.155968126207563 V56A-R73A -0.170914009204889 V58A-Y71A -0.171796621313219 R7A-G59A -0.188747361228681 S57A-D70A -0.190215938958951 V58A-G118A -0.191278244455718 Y10A-I67A -0.192310685047287 A69A-S116A -0.193686681472223 V58A-R73A -0.194364488067857 V58A-L119A -0.194829131228864 R55A-A69A -0.201342208300378 R7A-V58A -0.207273209936606 R75A-H112A -0.209026329936069 Y60A-A69A -0.209660902484059 G8A-D61A -0.220916265794742 V56A-I67A -0.220989696264447 L15A-V56A -0.223149760208245 Q12A-A68A -0.22340272565173 L15A-R55A -0.24416574698794 P9A-Y60A -0.245451357573836 P9A-S57A -0.2494226549597 Q12A-Y71A -0.250990171440136 P9A-I67A -0.261792022229641 S57A-A69A -0.265403478131305 P9A-V58A -0.283279378600934 I67A-G118A -0.287342530322443 V56A-S116A -0.288837840428372 R55A-A72A -0.309055813279943 Y60A-S120A -0.314012983180851 L15A-P54A -0.320120373144292 Y74A-S115A -0.324830097179261 R7A-D61A -0.358957208217241 A13A-V58A -0.361516777611675 A13A-P54A -0.362121428428267 I67A-L119A -0.383297497644812 G8A-Y60A -0.38581368354024 P54A-D70A -0.402787274897153 A72A-V114A -0.424277571958729 R55A-Y71A -0.44384057102328 Q12A-P54A -0.475098275412202 Y71A-S116A -0.531256239461523 P9A-G59A -0.616500897112643 V56A-Y71A -0.678178679967135