[Mon Aug 29 16:51:05 2016] >Input file: TMA0A024R9I9M1G.pdb >TM segments: 44-65_ 72-119 MAIDEN score = 2.4939 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W64 -R76 10 W64 -Q79 0.958788194946021 E63 -L81 0.908228582292008 E62 -L81 0.883602211539881 L78 -E83 0.802766915071402 W64 -A77 0.738476695591222 V59 -W64 0.674270994687023 M72 -A77 0.597167618838284 L58 -E63 0.566380924454066 I113 -Q118 0.535673380814362 Q104 -K112 0.440587332319202 T55 -E63 0.430386955809203 L88 -K93 0.417699421463865 E84 -K91 0.386514516237785 V59 -E65 0.355222326517671 R90 -L95 0.34048251960033 Q54 -E62 0.334219899604284 R87 -K93 0.329178054066223 K105 -K112 0.317279247852809 R76 -L81 0.293850289977074 R76 -E83 0.288100086234791 E84 -R90 0.285163431526223 K112 -S119 0.278485420749766 L78 -E84 0.278336772571002 E62 -E80 0.273689961766041 W64 -E75 0.272222028497792 R56 -E62 0.266692400952792 T55 -W64 0.257610774314101 R76 -E82 0.252592080775062 K109 -Q118 0.243967794564159 E73 -L78 0.234623798963547 L106 -Q111 0.231747560651757 L58 -E75 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