[Fri Aug 26 17:07:59 2016] >Input file: TMA0A045KES3M1D.pdb >TM segments: 789-802_ 805-820_ 856-873 MAIDEN score = -10.9314 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- G792 -V798 0.635783702361517 G793 -V798 0.578205974632236 A799 -V806 0.502037021253761 A799 -L872 0.414375811628619 Q796 -L872 0.380121194483301 R810 -L815 0.375660932350807 A811 -A871 0.349208444484229 L815 -D820 0.318814810731428 L795 -D800 0.306152544200478 M812 -L869 0.297600971669533 D800 -L872 0.28956619357661 A808 -L873 0.283087284961959 V798 -V806 0.282706255785109 A799 -A808 0.273980503976849 M812 -D861 0.271796843944969 L815 -S868 0.258474998362267 L815 -G864 0.251558181597385 Q813 -G866 0.249535525345932 G807 -Q813 0.248935271086665 Q813 -S868 0.247719105590696 A808 -Y870 0.227821151262185 Q796 -R810 0.226721791506546 A819 -D861 0.22326924775475 S794 -A871 0.218181835091672 S794 -A811 0.214116530027871 V798 -M812 0.21071117688807 V806 -L872 0.206596055161964 R810 -A817 0.205511033930956 D860 -G866 0.20316887875985 P805 -L873 0.202513429772269 S794 -S814 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0.0687954986761534 A808 -S814 0.066340449620558 A816 -I865 0.0656832310970099 L795 -Q813 0.0640425465006524 L795 -L873 0.0633739784101737 A818 -G866 0.0596317358514624 A811 -I865 0.0582470188476354 L795 -A867 0.0579242309789914 L795 -A808 0.0546000223118996 R810 -A819 0.0534340074768704 G793 -S802 0.0526578596228795 L815 -Y870 0.0519310412406675 M812 -G864 0.0512978429470379 A816 -L872 0.0512132441309936 V806 -Y870 0.0510981352532074 S794 -L872 0.051040406179212 S802 -L873 0.048158082397924 L795 -V806 0.0463510957944493 A799 -M812 0.0458906601181548 A817 -L869 0.0456022282755664 A817 -G864 0.0449578133375712 P805 -R810 0.0434358640555987 A808 -L815 0.0431258214105563 R791 -V798 0.0418823008436053 M812 -I862 0.0397900451289295 A819 -N857 0.0379817074372389 A818 -S868 0.0376440582032327 L795 -S814 0.0368087794253209 Q796 -P805 0.0367006923639464 D860 -I865 0.0362296006043614 D800 -S868 0.0360783458727749 D820 -Q859 0.0345250425789438 N857 -G864 0.0340737621220728 R791 -A799 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