[Fri Aug 26 17:40:59 2016] >Input file: TMA0A0A0AMB2M1D.pdb >TM segments: 95-116 MAIDEN score = -1.5847 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y99 -K104 0.730248767658411 V100 -W105 0.5908519882879 G98 -K104 0.468722322318111 G98 -R103 0.25240495757806 D95 -R103 0.208724880178527 D95 -K106 0.194310782155603 Y99 -W105 0.186783969382057 R103 -P110 0.176850649000855 L96 -E102 0.17185836081856 D95 -W105 0.157400748061428 G98 -K106 0.154906007174186 Y99 -P110 0.124550148236269 G98 -V108 0.112843102970098 L101 -A107 0.0938949195919594 Y99 -K106 0.072811704196349 V111 -S116 0.0711491885856912 Q97 -R103 0.0639084103773979 K106 -V111 0.0573390335046557 R103 -E109 0.0392343772677979 Q97 -W105 0.0187576412957729 E102 -V108 0.0158307081242404 V100 -A107 0.0095066562241779 Q97 -A107 0.00775713424815039 Y99 -E109 0.00610490848341261 G98 -A107 0.00498333642400528 P110 -R115 0.00147791377166362 V100 -P110 -0.00210071357556796 K104 -E109 -0.047093170496872 E109 -W114 -0.0737331809553448 V100 -V108 -0.0813985731851948 L96 -K104 -0.087022611692845 L96 -V108 -0.100339807632894 D95 -E102 -0.103040995911378 L101 -V108 -0.107094450240566 K104 -P110 -0.119461486583354 W105 -V111 -0.126103971452341 D95 -V100 -0.127112633472316 Q97 -K104 -0.13119477493555 E102 -A107 -0.144932001616548 L96 -W105 -0.153302322226193 L96 -A107 -0.164520067943097 R103 -V108 -0.165407383175645 D95 -A107 -0.171451231623814 D95 -K104 -0.174042135004862 Y99 -A107 -0.182286224583633 V100 -K106 -0.18590271671029 G98 -W105 -0.190990028529284 L101 -K106 -0.206933645393422 L96 -K106 -0.23275538157396 Q97 -K106 -0.250745138456612 D95 -L101 -0.263710330790192 D95 -V108 -0.273627319691394 L96 -R103 -0.28356110883783 Q97 -E102 -0.30076816363662 W105 -P110 -0.343034175063234 Y99 -V108 -0.380729992403827 L96 -L101 -0.403524039868619