[Mon Aug 29 17:43:57 2016] >Input file: TMA6NDA9S7G.pdb >TM segments: B129-135_B166-175_B185-194 MAIDEN score = 14.6732 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- N173B-A187B 10 W174B-C185B 10 L172B-E188B 0.794690614370149 W174B-A187B 0.783695308753214 N173B-C185B 0.774227867734083 W174B-G186B 0.492515133656854 N173B-I189B 0.482565157949297 P175B-C185B 0.399266983161743 F171B-G186B 0.365907998098798 R130B-L190B 0.32820297570099 G186B-S191B 0.295289758157317 S169B-G186B 0.205927018610888 S169B-P175B 0.173206518667871 S167B-N173B 0.154069081757211 L172B-G186B 0.151155742709537 L129B-C185B 0.149029939046586 W174B-E188B 0.143632401642467 V170B-V194B 0.138386092426505 K135B-L193B 0.136662545824017 N173B-S191B 0.12334860534261 S167B-L172B 0.115667033729148 L134B-L193B 0.114929033697591 R130B-I189B 0.111645341945837 S167B-A187B 0.111598568960865 D133B-S192B 0.108874412313894 V166B-L193B 0.09799062898176 P175B-E188B 0.0976038727273714 C185B-S191B 0.0961081123046305 K135B-S192B 0.0949035110795848 N173B-L190B 0.0889452197247653 N173B-L193B 0.0829840371305592 L172B-L193B 0.0729237646847753 V131B-I189B 0.0723528098375841 L132B-S191B 0.0714467326049988 I189B-V194B 0.0687415946597945 S169B-C185B 0.0682611333811018 L129B-L190B 0.0660722197390067 L132B-I189B 0.0624082068461518 L129B-A187B 0.0560462370217201 L132B-G186B 0.0539157815309351 G186B-L193B 0.0525285376646645 R130B-S192B 0.0507942939369288 G186B-S192B 0.0466378509641003 L129B-L193B 0.0433642703979933 L172B-S191B 0.0300739304282178 L172B-A187B 0.0247099518245486 R130B-S191B 0.023790192049125 V170B-E188B 0.0232124844310266 D133B-S191B 0.0117269874000676 W174B-S191B 0.00983091083952248 W174B-L190B 0.0073519697056641 V170B-C185B 0.00629541986723403 S169B-E188B 0.00144316199208738 F171B-V194B -1.02727102428979e-05 K135B-V194B -0.00411480107717299 V170B-P175B -0.00714451107703118 F171B-A187B -0.00998455330960013 L129B-E188B -0.0104411795352722 L132B-L190B -0.0110637682039818 S169B-W174B -0.0112683746262743 F171B-E188B -0.0120574095556578 V131B-E188B -0.0133739604243623 S169B-L190B -0.0145812227100057 A187B-V194B -0.0155813903418498 R130B-N173B -0.0207718867938262 R130B-E188B -0.0207771184409831 V131B-A187B -0.0239409761102243 V170B-G186B -0.0267768904550394 V166B-A187B -0.0273605832990862 N173B-S192B -0.0346773382164806 L132B-C185B -0.0374917875612164 V166B-V194B -0.0434861051414559 E188B-L193B -0.0447352070883715 V131B-F171B -0.0511247662955592 V170B-L190B -0.0514907971470251 V131B-V194B -0.058112866429652 L129B-S191B -0.0596326811262285 V170B-S192B -0.062768190496719 F171B-S192B -0.0646252954678777 P175B-L190B -0.073962450535074 L132B-A187B -0.0805864798751652 R130B-F171B -0.0825187110667898 K168B-A187B -0.087820526987068 L129B-N173B -0.088354196699751 K168B-W174B -0.0919052062001589 D133B-L190B -0.0927397480886887 L129B-I189B -0.0960670151250849 L129B-S192B -0.0982022185816023 L134B-S192B -0.101347323441315 K168B-G186B -0.10168569271934 V131B-S192B -0.102985367872671 L132B-F171B -0.103175633427981 L129B-G186B -0.111553797016608 V170B-I189B -0.117084190632136 R130B-L193B -0.118297253189493 F171B-S191B -0.118368166276199 P175B-A187B -0.119032477059081 L172B-I189B -0.123362068467492 V166B-L172B -0.124406057981318 F171B-L193B -0.126181977912196 F171B-I189B -0.137005123895248 P175B-I189B -0.141090097054269 V131B-C185B -0.141129243047506 F171B-L190B -0.147519343229451 P175B-G186B -0.148192733182375 V131B-G186B -0.148806901198772 L129B-L134B -0.160009441934846 R130B-G186B -0.160422944460036 L132B-E188B -0.161802257991909 A187B-L193B -0.169856737750394 L172B-S192B -0.1793653882596 V170B-L193B -0.191510695554184 S169B-A187B -0.192179202512093 L132B-L193B -0.192438680706846 A187B-S192B -0.195000149695153 D133B-L193B -0.198495878284285 R130B-V194B -0.211145318660058 L132B-S192B -0.219522153585592 L172B-C185B -0.223184249969464 R130B-A187B -0.223654972619738 K168B-N173B -0.224082818462026 L132B-V194B -0.256045664668387 V166B-F171B -0.257569036578003 D133B-V194B -0.281795557753938 V131B-L193B -0.288474939388108 L134B-V194B -0.304478979714286 L172B-L190B -0.312267071973721 V131B-S191B -0.331580114622856 W174B-I189B -0.356981437844877 V170B-A187B -0.387500239139866 R130B-C185B -0.400345463961125 V131B-L190B -0.400976165623295 C185B-L190B -0.495119230011283 F171B-C185B -0.802061524588416 N173B-E188B -0.825565323380449 N173B-G186B -1.09955671616669