[Fri Aug 26 18:16:07 2016] >Input file: TMB5HDY7M1D.pdb >TM segments: 431-449_ 451-472 MAIDEN score = 7.3681 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P434 -G440 10 P434 -L442 1.07771502064873 E447 -A452 0.934327521179894 E447 -A453 0.895303050123877 P438 -L459 0.883287142584049 D439 -E458 0.627209779732735 L437 -P460 0.619241500462072 V454 -L459 0.593244682405009 L437 -L459 0.570655008831083 V455 -G461 0.542719280883482 R446 -S451 0.539148136323101 L437 -R457 0.365477237302322 P434 -E458 0.359781538357332 A441 -A469 0.357491736214202 L437 -E462 0.308948259681359 L442 -E447 0.302074364974914 D439 -V454 0.300235658505184 P434 -D443 0.267596808283574 P434 -A441 0.265408810556552 G432 -D439 0.249425446045202 L459 -S466 0.247385496261338 G440 -A471 0.225296716985854 V454 -L468 0.210087405514598 A453 -A469 0.207205015467132 T444 -E458 0.204494369767596 A441 -E458 0.197395403302034 A435 -A441 0.191321975861156 G432 -D443 0.190772246860799 D439 -A453 0.186032265031352 L459 -G465 0.1729739582132 A456 -E462 0.169613038301534 E447 -A456 0.167099121211705 G436 -A469 0.164287430428912 D431 -G436 0.157206629052615 L437 -S466 0.141958695274858 P434 -L459 0.134090161349802 P460 -G465 0.133558236270165 T444 -A452 0.13176540632919 P460 -S466 0.12730228598713 G436 -P460 0.126722876767624 V455 -S466 0.125413323314302 P438 -A453 0.121384701329432 E447 -R457 0.11978716290177 E447 -E458 0.119147792650527 A435 -P460 0.117691060075879 A433 -G440 0.114856130024659 G440 -V454 0.112959332847436 A433 -T444 0.111285544001761 D439 -S466 0.110719018130378 T444 -S451 0.110535261931743 A435 -D443 0.109212208666479 A445 -A453 0.109039246660157 V454 -G465 0.108062998252806 G440 -V455 0.107976499525811 V455 -A469 0.107501648998703 A441 -R472 0.107307389054999 G436 -T444 0.107180159340238 G432 -A469 0.106754148295755 G440 -A456 0.106565344168972 A435 -G461 0.106245809838791 L442 -L470 0.105549287467244 D431 -L468 0.103828757980415 L459 -L470 0.103111727305898 G436 -A456 0.102975423791962 A452 -R457 0.102805904392484 A453 -P460 0.1021931923861 A453 -S466 0.10009559255192 P434 -A445 0.0986097537940216 A453 -G461 0.0974814421909884 T444 -A453 0.0971069819643917 L449 -V454 0.0957864893746376 G432 -A471 0.0956877883192373 G436 -G461 0.0952549876721553 D439 -L467 0.0952215981752156 P438 -G464 0.091520115364764 L442 -A456 0.091381150922172 P438 -G465 0.0893791980305245 V455 -L467 0.0888352013822429 D439 -G461 0.0886207609190248 L437 -L468 0.0866290503748581 L437 -A463 0.0852413888361114 V455 -A463 0.0817146684690728 G432 -L442 0.07995920204716 A445 -A452 0.0797360465737538 L437 -V454 0.0773341563855352 A435 -V455 0.0772325174728881 P438 -E458 0.0770688914583938 G440 -G461 0.0730888388699817 A441 -A453 0.0715777836211249 E458 -L468 0.0712739575090308 E447 -L459 0.0709490973551641 G436 -E462 0.0707521278810348 D439 -E447 0.0703213778658258 G461 -L467 0.0699024016733238 D439 -R457 0.0691726067443081 L442 -A469 0.0676365162623243 A463 -A469 0.0670481885140193 A435 -L468 0.0661875502441704 P434 -A456 0.0641675586610857 A433 -D439 0.0628491819609738 G440 -E447 0.0623897876532735 L459 -A469 0.0600632128023748 G461 -L468 0.05904348396672 P434 -A471 0.0588626091605571 A452 -L470 0.0581521453843521 G440 -A453 0.0555711083213772 G440 -L467 0.0547062723445353 S451 -A456 0.0533237527967669 G440 -R472 0.0525398127970726 L437 -L467 0.0514695361408766 V454 -G464 0.0507568345645112 A452 -P460 0.0497478142929957 A441 -R446 0.0482617448688956 D439 -R446 0.0477434002522861 A456 -A463 0.0453882319663399 R446 -V454 0.0451715620026905 V454 -A469 0.0435544389872291 G440 -S466 0.0430362420915805 E462 -L467 0.042505740607611 A433 -L442 0.0409383251387965 A456 -S466 0.0391421521838424 T444 -L449 0.0384753707198255 G432 -L470 0.0378258223355954 A435 -T444 0.0362998663267329 D431 -T444 0.0360622027631308 A433 -R472 0.0352088573104687 A441 -L468 0.033764744243399 D439 -P460 0.0336726631272262 G440 -E462 0.0332637907973179 A435 -L470 0.0331326673057308 P434 -P460 0.0329636206981805 L442 -T448 0.032824105884715 A435 -L467 0.0324698485093229 A435 -A469 0.0323782254838716 D443 -L470 0.031090824021649 A452 -L468 0.0254218462746536 T444 -A456 0.0248764462837672 P434 -A469 0.0241570110123455 R457 -E462 0.0229882465466993 D431 -L437 0.022396129583381 G465 -L470 0.0203713796480001 P460 -A469 0.0184613551228985 L437 -V455 0.0156441218164733 D443 -A453 0.0152737791729787 A435 -A456 0.0146512554104374 P438 -D443 0.0143316630031847 G436 -L468 0.0128651524829055 A433 -L470 0.0121945968962667 A452 -A469 0.0118289051588096 A441 -A471 0.0117987722969004 V455 -G464 0.0114525542273509 D443 -S451 0.0111269601532655 V455 -G465 0.00926215246549589 G432 -R472 0.00909544604319973 G436 -R457 0.0076547492401613 T448 -V454 0.00736342244024879 D439 -L459 0.00732195063114727 L459 -G464 0.00468678031860037 T444 -L459 0.00411204579730029 L442 -A452 0.00394184800441977 G436 -D443 0.00316430526480571 A453 -L470 0.00126291382251686 D439 -E462 -0.00225573169711035 L442 -R457 -0.00483874707199572 S451 -L470 -0.00723735067551878 P438 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-0.0543385609571149 L459 -L467 -0.0564146430797505 A453 -L459 -0.0565663865532553 A433 -D443 -0.0596124677133485 P438 -G461 -0.0604680599331391 P434 -L468 -0.0606535304254494 A435 -A463 -0.0606974077949372 P434 -D439 -0.0610296764426947 D439 -A445 -0.0620160042397018 A452 -E458 -0.0632669441411289 A456 -A469 -0.0638659837531383 L442 -V454 -0.0653229065366929 L442 -S451 -0.0662763302396234 R457 -L468 -0.0664307631453585 A441 -E447 -0.067054244572107 L442 -A453 -0.0696800402905353 G432 -T444 -0.0697845272286595 E447 -A471 -0.0753282382115534 A433 -E458 -0.0780295740679269 D431 -L467 -0.0809309563249498 P434 -T444 -0.083284717613999 D439 -A471 -0.083527318988712 A456 -L468 -0.0854723195498592 A453 -L467 -0.0855683953720918 T448 -A453 -0.0879924369824912 D439 -A469 -0.0887589504340562 D431 -A471 -0.09021448356759 G440 -R446 -0.0904527603608614 A435 -R457 -0.0904674153345448 R446 -A456 -0.0923948982971354 L437 -A453 -0.0929595374646688 T444 -L470 -0.0935422649979989 R446 -E458 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