[Fri Aug 26 17:30:08 2016] >Input file: TMD4ADC8M2D.pdb >TM segments: 207-237_ 245-268 MAIDEN score = -19.6691 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L231 -E248 0.972769877699474 R250 -A255 0.970730893568398 V212 -F217 0.836618585648944 V212 -D263 0.809690245329149 D235 -I245 0.809026771306513 L247 -I252 0.805405747085675 D228 -I252 0.780640577773721 L258 -D263 0.736519031221601 V208 -L266 0.698867679289059 D235 -E248 0.692829834474932 R250 -I256 0.558055837363427 D228 -I256 0.504826069556927 V212 -L266 0.501828913846959 P246 -A251 0.500081802173376 F230 -D235 0.496683905240141 V208 -R267 0.470280150522545 V212 -R218 0.429373629547805 L211 -F217 0.423601304579193 F217 -D263 0.394605302021976 D235 -Y249 0.371832163510066 V229 -Y249 0.356342311001996 H209 -R267 0.325806531178102 S214 -G221 0.297523186024456 V262 -R267 0.296047594950057 Y249 -L254 0.283604533425104 R218 -L223 0.270924019839714 G221 -D228 0.260385949698502 V232 -E248 0.259518641867381 L223 -D228 0.247048907889342 R218 -D263 0.243687148409288 L224 -I256 0.20625274660825 E248 -A257 0.196910060501992 V212 -F220 0.181081526038319 V215 -I222 0.179700420826368 V232 -I245 0.17581126018505 V208 -D263 0.160119771642398 I225 -A257 0.159008095886121 G221 -V264 0.158484336415673 F226 -S253 0.157502686158683 V212 -I219 0.15706387448426 V229 -A257 0.155613069337418 L224 -V229 0.155126674546624 G221 -L258 0.154331087060059 F230 -Y249 0.14694981343183 D228 -Y249 0.145606394736678 F226 -F260 0.144640199653161 D228 -A251 0.143817343502286 E248 -S253 0.136201085753015 I225 -L261 0.134584161231976 R218 -F259 0.134362794356448 R218 -F226 0.131814045097819 H237 -Y249 0.130616290679284 S213 -I219 0.127291836414507 P246 -A255 0.123444676884983 A255 -D263 0.123250462425835 L227 -L254 0.119037662765196 F220 -F260 0.116275960649785 L231 -A251 0.113291843808041 S214 -R267 0.110612865222879 A233 -L247 0.109884905755614 L224 -L254 0.109094854905129 L224 -A233 0.10807945509238 G221 -F259 0.107719720925123 A233 -S253 0.107038851750124 G221 -A255 0.105809686839643 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