[Mon Aug 29 17:55:07 2016] >Input file: TMD6RD79M1G.pdb >TM segments: 52-85 MAIDEN score = 0.0959 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V60 -R67 0.896732317465647 E64 -L84 0.798355675098902 E64 -P71 0.485352776200323 P65 -L84 0.44883225036622 E69 -C83 0.446825771222813 P63 -E69 0.406431028072112 E64 -G77 0.325029465498078 V68 -C83 0.308136989869502 P63 -P71 0.302308446318095 V60 -D70 0.279355930309967 P65 -H82 0.248710901811716 V76 -C83 0.244559775513468 E64 -V80 0.238242160132446 P63 -T79 0.237992322884213 V80 -C85 0.227280496023918 P65 -C83 0.193522871531539 E69 -V74 0.174723953629941 V68 -V80 0.169483917675249 V76 -H82 0.164230135243015 R67 -C83 0.159713019079468 P57 -P71 0.154931315491391 D70 -A75 0.150247840553133 G62 -E69 0.149052359483418 P57 -G73 0.144351682100766 V58 -V74 0.143327576238984 V60 -V74 0.142033899791056 P63 -V68 0.13343127694278 G73 -G78 0.116114871123763 A66 -G81 0.115906827682254 G62 -G78 0.111475547505953 A66 -P71 0.110635835183577 R67 -G78 0.107837902647603 P57 -A75 0.103566863356166 G62 -T79 0.101819339037332 P65 -Y72 0.09980937487046 P63 -D70 0.0990990666619411 G78 -C83 0.0974105838761661 G62 -G77 0.0950957136044419 G77 -C85 0.0944115466729043 A66 -H82 0.0904104936384895 D70 -C85 0.0897131448079189 P65 -G78 0.0892863820262084 Q61 -R67 0.0874674183997519 A75 -H82 0.0831120939880829 Q54 -V60 0.0817913520744593 V60 -V76 0.0781697106835129 A59 -G78 0.0767429541065439 V60 -P71 0.0764187759646542 L53 -V58 0.0719865594449409 A75 -G81 0.0704304516211307 V60 -G78 0.0688300286861292 A59 -V68 0.0684973496327999 A66 -V76 0.0659594763098621 V60 -V68 0.0641268489337445 E64 -A75 0.063765723729845 R67 -T79 0.0636631431944409 V60 -A66 0.0607995885192678 P65 -G77 0.0607134462749044 P71 -L84 0.0581360895145391 P57 -Y72 0.056128804801455 Q52 -V58 0.0552365211998855 A59 -V74 0.0532095604889502 R67 -V76 0.0531706003417236 P65 -V76 0.0517763649157241 V58 -P71 0.0512782064158257 A66 -V74 0.0487380041821712 A66 -V80 0.047933380243931 Q61 -A66 0.0474477485868504 R67 -C85 0.0458033652883225 R67 -V74 0.0453788420564312 V60 -E69 0.0453096718696884 R67 -L84 0.0383857905616072 Q52 -P57 0.0373948816644756 E64 -V74 0.0352214330515661 A66 -C83 0.0339592380044669 V58 -R67 0.0336998181966544 Q61 -G78 0.0316146220251721 P63 -V80 0.0307004901388379 G77 -H82 0.0301014441605255 A66 -G78 0.0290724164152047 V68 -T79 0.0285184218837667 V74 -T79 0.0266454228709837 Q56 -G73 0.0254891252905143 A59 -A75 0.0246335102361352 P65 -C85 0.0200506900392989 P71 -V76 0.0184927786720697 A66 -C85 0.0170050848460641 P65 -A75 0.0159775563722349 E69 -L84 0.0116784643972259 A59 -P71 0.00749620238905124 G78 -C85 0.00700879456360504 G62 -L84 0.00642661245362852 G73 -L84 0.00594052445371185 G77 -L84 0.00538635577987723 E64 -T79 0.00497908299844685 Q61 -E69 0.00279187596848063 Q61 -T79 0.00253499665230539 D70 -G78 0.00252662594110595 V68 -G73 -0.00099247104889244 R67 -Y72 -0.0021886082016227 E69 -C85 -0.00225175484211526 P65 -V80 -0.00697134317676884 V60 -P65 -0.00831987898048525 V74 -C85 -0.00932772655542013 P65 -D70 -0.0126526261802811 A59 -A66 -0.0127077274272143 P65 -T79 -0.0128493215073986 P63 -G81 -0.0130418276174638 A59 -R67 -0.0139803003804619 Q56 -P71 -0.0160039298686137 V68 -A75 -0.0177717274421414 A66 -T79 -0.0181343329361265 P63 -A75 -0.0288832233838328 E64 -H82 -0.0345997324879477 P63 -L84 -0.040816026726807 A75 -C85 -0.0424750346716794 Y72 -C85 -0.0443721830628174 P65 -V74 -0.0456035943690209 E64 -G73 -0.0459383574028887 R67 -G81 -0.0482089747300432 D70 -L84 -0.0498658201382192 A66 -L84 -0.0512578288141663 V60 -A75 -0.0526831051892822 Q54 -A59 -0.0542052344419726 P65 -P71 -0.0544171779122786 P63 -G77 -0.0554949000489551 G62 -V80 -0.0557561330028706 A59 -E64 -0.0573047571928498 Q52 -A59 -0.0605870840378071 P57 -V68 -0.0659375527227588 V68 -G78 -0.0661827580139498 P65 -G73 -0.0665895208194309 A59 -E69 -0.0678474325058676 P71 -G77 -0.0694429778030907 P63 -V76 -0.0732021181480256 P63 -V74 -0.0734558521057241 V68 -V76 -0.0767898564657776 P55 -V60 -0.076909508314584 P57 -V74 -0.0773397934536351 V74 -V80 -0.0792886941812081 L53 -V60 -0.0798274868625768 P71 -G78 -0.080031620721267 V58 -V68 -0.084126964534009 G62 -P71 -0.0896987771682338 E64 -D70 -0.0926495496467021 E69 -A75 -0.0956791747758481 G62 -V76 -0.0991185523967744 G78 -L84 -0.101847349926434 V68 -G81 -0.102722302240719 V74 -L84 -0.103348344173325 V68 -G77 -0.103475590656216 V74 -G81 -0.10459673045051 Q56 -Y72 -0.106214643380894 A75 -L84 -0.107739700280957 V58 -E69 -0.112308995405954 R67 -V80 -0.112605946579484 R67 -A75 -0.117212526252508 E64 -G81 -0.119916917422834 E64 -E69 -0.120288061470705 G62 -D70 -0.124993594489314 D70 -V76 -0.126724560711543 G73 -C85 -0.12967391592419 L53 -A59 -0.134813334493617 V76 -G81 -0.153901544084478 A59 -D70 -0.155779310690574 P65 -G81 -0.169910277773718 V68 -C85 -0.172217228561993 V68 -L84 -0.17817369906192 E69 -V76 -0.183232766493701 P63 -C83 -0.20464133564023 P63 -C85 -0.211587194054776 E64 -G78 -0.24124978604078 G62 -V68 -0.245127939900466 P63 -G78 -0.255941743728383 D70 -C83 -0.256300098797719 P63 -H82 -0.270604428119267 V58 -D70 -0.278355151857888 D70 -V80 -0.278456460806782 T79 -L84 -0.280896131572652 E64 -V76 -0.287986502935694 G62 -R67 -0.296869387132097 E64 -C85 -0.299329927174647 Q61 -V68 -0.304076725779535 P71 -C85 -0.312847039147407 V76 -L84 -0.333323934343836 A75 -V80 -0.338778949276221 V68 -V74 -0.345719859204969 T79 -C85 -0.393748966161864 E64 -C83 -0.408230381018627 V76 -C85 -0.466124085947103