[Fri Aug 26 16:25:09 2016] >Input file: TMD9XJ71M1D.pdb >TM segments: 381-401 MAIDEN score = -9.0343 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L395 -R400 0.415311674669799 S392 -G399 0.252961734552668 L382 -C389 0.172820339567878 C389 -L396 0.158525825686325 G386 -A393 0.154899918843379 M390 -W398 0.14506192776916 A393 -A401 0.133565377615024 A391 -G399 0.107821144601087 L395 -A401 0.0979484065349658 L382 -M390 0.0793938168765009 G386 -L394 0.0697131550458572 L394 -G399 0.0656257219431664 V384 -S392 0.0650959338761581 A385 -A393 0.0644521558216564 A391 -W398 0.0531710077528613 V384 -A393 0.0503576847879259 A381 -A391 0.0355619862985521 A381 -C389 0.0355127437969101 L388 -L396 0.0285877743286838 V384 -L394 0.0132243811753558 L396 -A401 -0.0128913969974715 S392 -R400 -0.0241849342505045 A391 -R400 -0.0360048160876305 M390 -P397 -0.0395326539980236 A381 -L387 -0.0415936142775953 M390 -G399 -0.0508843992567707 G386 -L395 -0.0549538114857118 L387 -L396 -0.0559401221235305 A381 -M390 -0.062435625993417 L383 -A391 -0.0697569796326123 L394 -A401 -0.072543517226805 G386 -S392 -0.145824379459913 A385 -L394 -0.162330157697632 L382 -A391 -0.162397469010844 A391 -P397 -0.166113548225249 L383 -S392 -0.166980813893208 A393 -W398 -0.1762581694966 L387 -L394 -0.188086558054967 L388 -L395 -0.188423772696384 A385 -S392 -0.191606474729556 A393 -G399 -0.192456401518119 L387 -L395 -0.197736940128595 V384 -M390 -0.205343192134225 A385 -A391 -0.220285883540013 S392 -W398 -0.221242884319234 L387 -A393 -0.222783861459982 S392 -P397 -0.22957239896555 A393 -R400 -0.236508984588722 A385 -M390 -0.253041527854108 C389 -L394 -0.255364706298193 L394 -R400 -0.272921902581576 A381 -L388 -0.277324684482978 L388 -A393 -0.27766782232241 L383 -M390 -0.282708902858398 A391 -L396 -0.298899789507097 V384 -C389 -0.314128439118532 C389 -P397 -0.314161406892814 L387 -S392 -0.338040325306177 M390 -L395 -0.345195270922789 V384 -A391 -0.352485292391747 L383 -C389 -0.365961231336243 L382 -L387 -0.377444642216024 A381 -G386 -0.39058326239412 L383 -L388 -0.393460705347742 L382 -L388 -0.42756858783383 L388 -L394 -0.459986501298596 G386 -A391 -0.475936772078789 M390 -L396 -0.476402121242372 C389 -L395 -0.489941765312517