[Mon Aug 29 17:03:51 2016] >Input file: TMF4I4Z6M1G.pdb >TM segments: 372-395_ 398-422 MAIDEN score = 38.4200 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R387 -V392 10 I385 -Q400 10 R394 -S399 10 I393 -Q400 6.73342026096452 I393 -S399 1.44026475826351 L386 -I393 1.2670076027194 I385 -I393 1.06955185627764 P382 -P407 0.841463844060931 Y383 -I404 0.758221181073224 I385 -S399 0.756062506624437 L386 -V392 0.689306394199164 Q391 -F418 0.67911435578034 M375 -T380 0.558162368185808 G389 -V420 0.530823880586519 R373 -G408 0.526470129346425 Y383 -Q400 0.51599539921962 L388 -F418 0.46794274585999 I393 -F416 0.466017936818993 V392 -S399 0.456771857407388 P382 -I404 0.449889535082412 T401 -Q414 0.44349361286833 K379 -P410 0.39768646578424 V392 -Q400 0.394944377354721 P382 -V403 0.37784265497295 I404 -P410 0.365489852722076 P382 -Q409 0.359930523329801 D390 -F418 0.353797793729518 S395 -Q400 0.329823221055291 P407 -W412 0.327393479924269 R373 -D381 0.32319950518124 D381 -P410 0.320355598919331 L386 -R394 0.310090409136688 R373 -Y383 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