[Mon Aug 29 17:27:47 2016] >Input file: TMF6YML9M1G.pdb >TM segments: 294-303_ 406-420 MAIDEN score = -0.4666 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P299 -R414 0.93732743393827 A301 -D415 0.87567690854077 A301 -V410 0.634344780580026 L298 -R414 0.586815631425176 A301 -F413 0.521640752325345 S302 -A411 0.463338098285523 L298 -V410 0.357586073413924 C297 -F413 0.35375924659089 R414 -K420 0.313293260810735 L298 -A411 0.296169655431292 A411 -A418 0.289011822593805 D300 -F413 0.280835792768354 P299 -T408 0.278569210297661 A412 -A418 0.244598023963283 H303 -A411 0.232910305586093 P299 -V410 0.183604967115653 P299 -S419 0.170915698404457 D300 -W416 0.158805055857772 A301 -T408 0.156652877159794 C297 -H303 0.153570743573074 D300 -R414 0.138840981677164 Y407 -A412 0.138142967240039 H303 -V410 0.13159740199501 D300 -A418 0.128783770267129 P299 -A418 0.123077762772261 T408 -I417 0.113534145257042 T408 -R414 0.112047862921309 A301 -S419 0.109799011249365 P299 -Y407 0.108090671407936 N409 -W416 0.10038038656919 D300 -N409 0.0970957331939024 C297 -A412 0.0962353310450768 V296 -A418 0.0961634009538375 A412 -S419 0.0895330315575347 D300 -I417 0.0854241660193791 D300 -A412 0.0838415217675643 C297 -S302 0.0829687530404492 S302 -N409 0.0817001685021954 L298 -A412 0.070652350027367 R414 -S419 0.0678464618204386 V410 -A418 0.0658893067699653 P299 -I417 0.0514865051914377 V296 -A411 0.0446524930183161 T408 -W416 0.0437040553271766 C297 -I417 0.0430316947536822 N409 -I417 0.0393094206410689 H303 -F413 0.0384551045378607 T408 -D415 0.035226659143885 C297 -A418 0.0344822056802707 L298 -H303 0.0327472219478846 L298 -T408 0.0319107264729617 P299 -D415 0.0281776411121539 V406 -A411 0.0269543552349525 C297 -A411 0.0226095277473344 D300 -S419 0.0225818771701185 V296 -I417 0.0224680289171788 S302 -A418 0.0178449818545214 V406 -A412 0.0176212267295224 S302 -D415 0.0090216632988307 Y407 -R414 0.00200236851855573 N409 -D415 -0.00360722829973481 V296 -R414 -0.0194198334782838 A301 -A411 -0.02681185645193 D300 -T408 -0.0282379902249339 P299 -A411 -0.0302922015622507 D415 -K420 -0.0354558584627833 N409 -A418 -0.0387149027404652 L298 -D415 -0.0396263974499647 S302 -I417 -0.0396659856684911 R295 -I417 -0.0464149061758308 A301 -A418 -0.054520162018914 A411 -S419 -0.071302608462612 F413 -S419 -0.0780893504613069 S302 -W416 -0.078457422835581 L298 -S419 -0.084902006121089 L298 -N409 -0.0871738799699435 V296 -V410 -0.0885170752922941 S302 -R414 -0.0901628403626461 P299 -A412 -0.0941863302868764 A301 -I417 -0.0996905995883957 H303 -N409 -0.102741140291822 A411 -K420 -0.105579379342936 V296 -N409 -0.107596495397091 V410 -S419 -0.109191050972266 P299 -W416 -0.109499298710721 A411 -W416 -0.11058979334666 D300 -V410 -0.118373495360037 L298 -F413 -0.130083348448713 S302 -F413 -0.138814933259669 H303 -A412 -0.143751010724775 C297 -V410 -0.155589462291197 A412 -K420 -0.15952559228442 L298 -A418 -0.162388987486612 L298 -W416 -0.1628715257593 Y407 -F413 -0.163740075359875 F413 -K420 -0.166446856662765 H303 -R414 -0.169576957217215 A301 -N409 -0.172250872883655 L298 -K420 -0.177850398314432 A411 -I417 -0.182423756624413 S302 -A412 -0.190853709029456 V410 -W416 -0.197860970905133 T408 -F413 -0.203265249627651 D300 -D415 -0.203306428063567 V410 -I417 -0.205936102330266 V410 -K420 -0.206356598134553 A301 -W416 -0.219537131882897 C297 -D415 -0.239138917918427 A301 -A412 -0.240145324684585 P299 -F413 -0.24516965107211 H303 -D415 -0.25371103557779 S302 -V410 -0.256185205390306 A412 -I417 -0.258028730565293 N409 -R414 -0.260317224113686 L298 -I417 -0.264555890804376 P299 -N409 -0.274277906289708 R295 -V410 -0.281858669342162 C297 -N409 -0.296133806235576 V410 -D415 -0.299765571514857 C297 -R414 -0.430585897371919 F413 -A418 -0.461206796799804 D300 -A411 -0.584793810557675 A301 -R414 -0.58484002203595