[Mon Aug 29 16:45:22 2016] >Input file: TMF8VTQ9S3G.pdb >TM segments: A593-606 MAIDEN score = -0.5312 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R601A-H606A 0.261735877365437 E594A-Y599A 0.161556709974498 Y599A-Q604A 0.147925103518498 Q600A-H606A 0.14224502600853 A595A-A602A 0.132512477007464 A595A-R601A 0.120250546246034 Y598A-L603A 0.116622884676849 Y598A-H606A 0.106434061966013 Y599A-H606A 0.100530033396248 Q600A-L605A 0.074790710445269 A595A-L603A 0.0562991622786555 A595A-Q600A 0.0313086791382799 M597A-Q604A 0.0311510520504346 K596A-L603A 0.0304316122917863 K596A-Q604A 0.016066903473023 E594A-Q600A -0.0283368247903946 M597A-H606A -0.0304011618025868 A593A-Y599A -0.0341899944007336 Y599A-L605A -0.0727827566052435 K596A-L605A -0.0754907263811244 A593A-Y598A -0.103834711492125 M597A-L605A -0.119641300115184 K596A-R601A -0.12796901690441 Y598A-L605A -0.129200854290076 K596A-A602A -0.181428814231738 Y598A-Q604A -0.338102848256975 M597A-A602A -0.338262655721752 M597A-L603A -0.481382119099282