[Mon Aug 29 16:49:15 2016] >Input file: TMF8W1J2M1G.pdb >TM segments: 57-74_ 79-121 MAIDEN score = -2.0651 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F101 -M111 2.68111388339532 I66 -L71 1.51295029114119 L73 -K84 1.0786862012549 L74 -K84 0.988088629760577 R97 -I116 0.957239827978845 F101 -F112 0.943350448931691 F101 -W108 0.927252817034227 L74 -I81 0.887229329852998 K68 -H88 0.835075539358971 P59 -R65 0.831229212982151 V69 -F85 0.821640724007863 L70 -I81 0.789128334282936 L67 -W72 0.749030113575308 L70 -F85 0.704810275703262 V69 -L74 0.698874166632177 W64 -L70 0.681505164605227 E103 -W108 0.623604027386946 L70 -K84 0.566420532682168 F101 -T115 0.560537807040545 G79 -K84 0.554655580575061 R97 -F118 0.505488563607586 R60 -I66 0.478356722812831 E103 -M111 0.443958156916122 E103 -T115 0.434672535890556 R97 -L117 0.434222886255919 K68 -F85 0.409182380270324 V62 -L67 0.403715916040341 R102 -M111 0.389153220337232 K68 -L73 0.388260721960028 M100 -S114 0.377620748229143 L74 -G79 0.361034535245225 R97 -F112 0.357600728679618 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