[Mon Aug 29 17:14:28 2016] >Input file: TMG1U2Z3M1G.pdb >TM segments: 298-312_ 413-429 MAIDEN score = -0.3008 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P309 -R424 0.900507577709098 A311 -D425 0.877239942187849 L308 -R424 0.613793282416424 A311 -V420 0.605074841880695 L298 -R304 0.595987325408823 L298 -I303 0.472979940215545 A311 -Y423 0.423902365338116 L308 -T421 0.356543372771586 Y299 -R305 0.354337437104563 L308 -V420 0.299664714968879 P309 -T418 0.285100278314358 A311 -T421 0.284467937789163 E310 -V420 0.238108177075011 Y299 -A306 0.235343933822536 C307 -T421 0.176627526397755 P309 -V420 0.17599827822581 P309 -S429 0.161694761256921 C307 -I427 0.148796991235709 C307 -Y423 0.148621659760606 A311 -T418 0.141883243153288 E310 -Y422 0.134516203896621 C307 -R419 0.131307637317873 E310 -T421 0.130545098984168 S301 -A306 0.130436637084024 T312 -Y422 0.125309116627754 R419 -W426 0.124805357581083 T312 -T421 0.114242199733333 T418 -R424 0.112637188858913 A311 -S429 0.108025824605319 A306 -T421 0.107541853805394 T312 -R419 0.103919378249415 L308 -Y422 0.103233266354124 T300 -A306 0.102327385846158 P309 -Y417 0.101348642542191 Y422 -S429 0.100504517037216 T418 -I427 0.0945423415961777 T421 -S429 0.0847573007818164 S301 -C307 0.0827501514283476 R424 -S429 0.062178563950813 T418 -W426 0.0559235956105937 E310 -M428 0.0546005379934884 E310 -S429 0.0528761948709811 T312 -I427 0.0528205957977696 P309 -D425 0.0507268721921199 A306 -M428 0.038262169646722 R419 -R424 0.037453969439865 P309 -I427 0.0372944621325049 T418 -D425 0.0361470474446657 R419 -I427 0.0343305686712965 A306 -R419 0.0265338586155073 E310 -T418 0.0175167446091429 T300 -C307 0.0139264575616421 C307 -T312 0.0139264575616421 A311 -Y422 0.0138611090745826 L298 -A306 0.00435152221033164 A306 -V420 0.0036118917499075 Y417 -R424 0.00229836294792829 I416 -T421 0.00186525872134391 L308 -T418 0.00158522490497948 E310 -R419 -0.0169210689671542 V420 -M428 -0.020285849259526 C307 -Y422 -0.0245020280985879 E310 -R424 -0.0267405203268232 A306 -I427 -0.0268964148786388 R419 -D425 -0.0305654106570232 T300 -R305 -0.0334421216298281 P414 -R419 -0.0393294348237752 L308 -D425 -0.0407399839656589 P309 -M428 -0.0459408914444608 T421 -M428 -0.0494135966033851 T312 -R424 -0.0500699021103215 T312 -D425 -0.0526057068973049 T312 -W426 -0.0569223183646163 L308 -Y423 -0.058519443205292 Y299 -C307 -0.0585764064011993 I416 -Y422 -0.0602246508508704 R305 -I427 -0.0618496075741897 T312 -M428 -0.0644788032055068 T312 -Y423 -0.0655658143078437 T418 -Y423 -0.0776279686245359 V420 -S429 -0.109944109595545 Y422 -M428 -0.113356107470855 P309 -W426 -0.114463340964637 E310 -D425 -0.114486658003876 L308 -S429 -0.115849800880056 L308 -R419 -0.116079151346213 A311 -M428 -0.117604587927556 T312 -V420 -0.135585607354257 C307 -V420 -0.14561926328407 A311 -I427 -0.148167297695713 L308 -W426 -0.151307559171876 E310 -W426 -0.156105730406766 L308 -Y417 -0.157245568199737 Y423 -S429 -0.159487996326826 A306 -R424 -0.16042791324724 E310 -I427 -0.162947826878407 E310 -Y423 -0.170772024444227 Y299 -R304 -0.176832904248592 T421 -I427 -0.182040400960236 P309 -Y423 -0.183616828544367 C307 -M428 -0.18518786489886 A311 -R419 -0.187913037261653 P309 -Y422 -0.18845124775723 V420 -W426 -0.191034583450748 Y422 -I427 -0.201804348536917 Y423 -M428 -0.203995846614947 A311 -W426 -0.217078120712557 C307 -D425 -0.223555811495979 Y417 -Y423 -0.231322014019913 L308 -I427 -0.233126892609484 L298 -R305 -0.279319519687754 R305 -V420 -0.280496662391018 L308 -M428 -0.28106776744851 T421 -W426 -0.291156774722403 V420 -D425 -0.301012574840774 V420 -I427 -0.302923241855904 P309 -T421 -0.31095773316946 R419 -M428 -0.319916051821077 R305 -M428 -0.324476093354806 Y417 -Y422 -0.351362706882963 P309 -R419 -0.368070205910551 C307 -R424 -0.435035791859121 A311 -R424 -0.639891318440301