[Fri Aug 26 16:31:07 2016] >Input file: TMM4N0H4M1D.pdb >TM segments: 138-158_ 161-180 MAIDEN score = -12.9812 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F151 -F165 0.988247917008167 A155 -F165 0.618447842847782 A155 -R162 0.60896580439204 F154 -F165 0.575273064799575 F151 -L168 0.503031762320275 F150 -A169 0.490871583497294 R162 -L167 0.473516223166698 F154 -R162 0.449902436226066 M156 -R162 0.43843689793704 A155 -L166 0.436626327258638 A155 -L161 0.432202372044866 V157 -R162 0.424489004193438 F151 -L166 0.410587809751582 H143 -R176 0.409958125034315 A155 -P163 0.403555645694747 A147 -L170 0.390137423638841 H143 -G173 0.349450102180629 G152 -L166 0.339600052107374 L166 -G173 0.287593660543805 A147 -G173 0.280086135254757 L171 -R176 0.278689369019392 G152 -L164 0.276765475677121 S144 -L170 0.27239345213952 V172 -V177 0.265066900067175 A149 -G173 0.260656215724302 G152 -L161 0.255736352026531 S144 -R176 0.250291250775345 H143 -L170 0.240819284256861 F151 -G173 0.230572556038553 H143 -G180 0.215295737989154 S144 -L171 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-F165 0.0682189248704301 S141 -L170 0.0673046946359559 A146 -F165 0.0646871279900085 A147 -S175 0.0639024725220629 G152 -R162 0.0608333949453392 F150 -L161 0.0564582570322676 S138 -G173 0.0562833521996763 A149 -I174 0.0556568586161905 G148 -M156 0.0549290759213177 G152 -P163 0.054407652196391 G142 -V179 0.0506975555758774 A153 -L170 0.0494629262198933 A153 -L164 0.0470944119594732 A149 -F165 0.0462563746304347 F151 -L170 0.0462250120115826 A149 -L164 0.0457055546457052 F165 -G173 0.0456668757184469 A149 -M158 0.0451798605126413 S138 -V179 0.0441489727340958 A146 -S175 0.0435052572963883 M156 -L161 0.0433131528832398 A149 -L168 0.0413433029178578 A147 -L164 0.0408494955551906 S141 -S175 0.0404597123570207 P140 -A146 0.0401879167007166 G148 -S175 0.0389458956934552 S144 -L166 0.0385815178189282 V172 -G180 0.0368201440241673 G148 -V177 0.034652767645873 T145 -G152 0.0343871341073756 G148 -R162 0.0335227886733023 A153 -L167 0.0325371621762039 G142 -S175 0.0323391845965191 S144 -G152 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