[Mon Aug 29 16:55:29 2016] >Input file: TMP24105S4G.pdb >TM segments: 233-266_ 469-487 MAIDEN score = 8.6144 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C236 -V251 10 I233 -L487 1.29346606258548 I233 -S254 0.869689812262076 I233 -Y485 0.855793964126687 I233 -T255 0.683514764358787 N237 -C248 0.670391035144096 L234 -L487 0.663110802595491 L234 -Y485 0.646787897332578 R235 -A253 0.644475277045824 I233 -A253 0.60983507394303 Y478 -D484 0.605501403028889 L234 -V252 0.582112412761386 E476 -D484 0.528243009915263 F244 -D484 0.520273480099479 T266 -F470 0.47757257888211 L234 -V251 0.456656790199412 C236 -V252 0.443114433449709 V474 -R479 0.429920039559473 C256 -E481 0.396601890720873 N237 -V252 0.39066327588246 D238 -C248 0.369487073231355 K240 -E481 0.368214853709063 K240 -G483 0.364908104607019 T264 -L477 0.364278670163988 R235 -L487 0.360698561879227 L234 -T255 0.356322423343336 N237 -R479 0.342092242847635 C236 -D484 0.320446347315964 C236 -K486 0.308487775672934 T266 -D473 0.293351228859473 R235 -E481 0.281814618191409 N237 -G243 0.280092590583214 M259 -R479 0.278687747276701 C236 -G243 0.278671045745096 A475 -L480 0.276408202143799 A475 -D484 0.268115199706574 E476 -Y485 0.260675138189674 D473 -Y485 0.252686917291812 T257 -Q263 0.246308412712363 Y241 -D484 0.242825924072039 T264 -L480 0.2420870228678 G243 -L482 0.237708806882483 K240 -C248 0.232248547920157 L234 -A253 0.23008876335875 D238 -V252 0.224443394421758 Y241 -L482 0.224199098796591 T257 -L487 0.221349389228766 C236 -Y485 0.219500948169761 R235 -G483 0.21944488125191 S242 -G483 0.21043260665044 G243 -C248 0.207655202016914 L234 -D484 0.199546876894099 R258 -V474 0.197774541784698 Q263 -E476 0.195794748617988 S265 -L477 0.192448116311747 C256 -Y485 0.190867913905616 C236 -S249 0.185010686504067 Q263 -Y478 0.183138030193881 K240 -L482 0.180182039419077 S242 -Y485 0.178781683874895 L234 -S249 0.176252942608099 D238 -R479 0.176206037970973 S265 -Y478 0.176018010922437 V474 -L480 0.175900094378193 Y241 -Y478 0.173300949350746 A475 -Y485 0.172032399726295 N237 -D484 0.168537895937484 T257 -K486 0.166127359187559 T257 -T264 0.165596188108912 M260 -Y478 0.165440568514518 T239 -D484 0.162176736681747 C256 -L487 0.161899042787826 G243 -A472 0.161636831452177 V252 -Y478 0.16116781247616 C236 -L487 0.160588069538304 L234 -S254 0.155479721733828 N237 -K486 0.155224574943235 L480 -K486 0.154516685071623 N247 -D484 0.151986905048115 C256 -V474 0.148880262288795 T262 -L477 0.148337241210452 L477 -K486 0.145428066766823 T255 -L487 0.142507027443891 R258 -E476 0.142250305153325 A472 -Y478 0.141839244569291 D238 -G483 0.135768492010369 T239 -E481 0.13504726850221 C248 -Y485 0.130394234280316 D238 -N247 0.129169693778698 R235 -C248 0.128349974458551 F244 -S249 0.127419603468653 F244 -R479 0.125686987946984 A253 -Y478 0.122974148761867 P246 -V251 0.119538023788029 R235 -T255 0.117290551146698 T264 -S471 0.116360694950901 D473 -K486 0.116060121436934 L234 -L477 0.114688454878149 R479 -Y485 0.113552652637328 E476 -L482 0.113332417272247 R235 -A475 0.107642142909899 R258 -A475 0.10219655080486 T264 -V474 0.100745294218433 T255 -A475 0.0999796211283055 N237 -L482 0.0998671881359154 A253 -L482 0.0992258780891282 N237 -S242 0.0985112372755692 R235 -F244 0.0975884523660677 N237 -A253 0.0972791945296063 C256 -K486 0.0972224312878653 T266 -A475 0.0968496805289525 R235 -D484 0.0964869911817889 T264 -A475 0.0963702039568423 N237 -S249 0.0951350409976204 G243 -E476 0.0937673688704312 S242 -E476 0.0926430657291313 S242 -R479 0.0922971618924771 S249 -K486 0.0904407068615449 P246 -D484 0.0903194302987587 K250 -D484 0.0902877653630562 M259 -Y485 0.0870554239841461 T262 -V474 0.0868756068693028 L477 -L487 0.0863418756904357 G243 -K486 0.0857055844641531 Y241 -E476 0.0854526083423552 S242 -Y478 0.0838493389589923 F470 -E476 0.0835042001811175 S265 -T469 0.0822708818450831 G243 -E481 0.0814191210680142 V474 -G483 0.079770199582329 V474 -L482 0.075011352371682 S254 -M259 0.0744250471150116 R258 -T264 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0.0177747580716918 T239 -V251 0.017655258612105 T255 -K486 0.0174403302200359 A472 -G483 0.0173300677733952 Q263 -D473 0.0169124231888214 T264 -F470 0.0165828144025388 T262 -D473 0.0163324557709519 K250 -G483 0.0157436852767495 T239 -F244 0.0155506590987015 S242 -N247 0.0154107172113345 S254 -Y485 0.0148122138037223 C236 -T255 0.0139776303347393 N237 -Y485 0.013760404869394 I233 -K250 0.0136846650033002 M260 -L477 0.0128683408489314 V251 -L487 0.0128188228431112 L234 -L482 0.0121146139451351 T266 -Y478 0.0119321020829877 D238 -A245 0.0115314085999896 K250 -L482 0.0110844586887255 L234 -C248 0.0105804915553558 N237 -A245 0.0105629562500487 S249 -D484 0.00928450203647765 C248 -L482 0.00878708083333635 V252 -E481 0.00868658443484316 V252 -D484 0.00843228213263103 R235 -R479 0.00756158407050195 S471 -E476 0.0062268731893913 V252 -Y485 0.00404574610308117 D238 -G243 0.00384914602665987 C248 -D484 -0.000131573640598237 C256 -T262 -0.0013054469673035 T266 -A472 -0.00162788965535254 D473 -G483 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