[Mon Aug 29 16:56:03 2016] >Input file: TMP26803S1G.pdb >TM segments: 535-560 MAIDEN score = -8.0946 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V546 -R551 0.334957844010552 R552 -L557 0.289431323643866 E545 -R551 0.286328725182797 R551 -L556 0.27217440554507 N535 -S542 0.263273399246955 T541 -Q549 0.238728216126634 V547 -R552 0.198320170555012 K538 -L543 0.180263932310145 E537 -E545 0.149385897090153 S542 -V547 0.146164947858694 K538 -V546 0.13105536112545 Q549 -L557 0.117766058687042 E537 -L543 0.0866848369212975 N535 -L543 0.0816528198338062 S544 -G553 0.080264425683124 L540 -Q549 0.0786027279627763 N535 -L540 0.0776087008977333 E545 -G553 0.072309909341354 Q549 -L554 0.0668709456700789 S544 -R552 0.0665093216901003 S542 -N550 0.0460177358538427 S539 -V547 0.0353075593005931 L536 -S544 0.0303235868214555 T541 -V546 0.0273784336654108 N535 -S544 0.0244424607645244 N535 -T541 0.021813046475772 S544 -R551 0.00957250053046232 S539 -E545 9.97319676554476e-06 G553 -K560 -0.000206166848588873 N550 -D555 -0.00113094352332821 T541 -N550 -0.00488650511034106 E545 -R552 -0.00638643162197039 L540 -L548 -0.0187478073291611 V546 -L554 -0.0252169827541415 E537 -S542 -0.0556378320833835 K538 -S544 -0.0563580275578481 L548 -L556 -0.0584854842704328 Q549 -D555 -0.0705506226693031 V547 -D555 -0.0763764691711071 L543 -R552 -0.0777084409313362 E537 -S544 -0.0780671165788589 V547 -L556 -0.0811361700458626 S544 -Q549 -0.0878714402224445 N550 -F558 -0.089865042978345 Q549 -L556 -0.0963545319273518 R551 -L559 -0.102120339338527 R552 -K560 -0.107964924885182 N550 -L559 -0.108216511816718 S542 -R551 -0.109623986421282 E537 -V546 -0.11355820346552 Q549 -F558 -0.120772326917689 L543 -R551 -0.124150560199893 L540 -E545 -0.127686961300006 L548 -L557 -0.128342220843845 L543 -N550 -0.135558148507905 K538 -E545 -0.13733669682688 N550 -L557 -0.146812681316238 V546 -G553 -0.147070386981978 V546 -R552 -0.15408850534515 L554 -K560 -0.159226475539813 E545 -N550 -0.163180706979511 L536 -E545 -0.163593649625394 E545 -L554 -0.165710617977887 D555 -K560 -0.169998772721992 S539 -L548 -0.175142035618626 S542 -Q549 -0.180504031473725 R551 -F558 -0.181007131437684 G553 -F558 -0.184971819678342 L536 -L543 -0.187965508356096 L536 -T541 -0.189280343584834 R552 -F558 -0.192674505301441 K538 -V547 -0.198139206585918 S542 -L548 -0.198349394626832 S539 -V546 -0.201229363438094 V547 -G553 -0.201662889600703 L540 -V547 -0.204053880531683 R552 -L559 -0.214064375748293 T541 -V547 -0.216555163375784 V546 -D555 -0.243307226750462 R551 -L557 -0.248637457236359 N550 -L556 -0.248715949424027 T541 -L548 -0.266586230381025 G553 -L559 -0.280029952656049 V547 -L554 -0.286358181993755 L543 -L548 -0.301717186226622 L548 -D555 -0.306251343088279 S544 -N550 -0.31737318120288 L536 -S542 -0.341307079099484 L548 -L554 -0.364178443702254 L554 -L559 -0.386516741307622 L548 -G553 -0.390773866181056 L540 -V546 -0.407839706196164 L543 -Q549 -0.408767195398804 S539 -S544 -0.513894888625644