[Mon Aug 29 17:00:27 2016] >Input file: TMP33498M1G.pdb >TM segments: 98-114_ 127-169_ 172-187 MAIDEN score = -11.5992 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C168 -C175 2.29566773534958 C168 -G173 0.948955434392996 F159 -H166 0.937613257560384 H164 -K169 0.916712614870141 L161 -H166 0.690705502105399 D158 -C168 0.64915722441388 D141 -H148 0.592311932718882 K169 -C175 0.564622440292265 L140 -S183 0.514594204187607 L140 -I186 0.462234613930958 H182 -Q187 0.418802575142797 H148 -N178 0.404513588976511 H148 -S183 0.396842096636858 T144 -S183 0.392066572057065 D141 -H182 0.384843990181267 C168 -M174 0.371710434269859 H148 -H182 0.371529058810259 L162 -G167 0.357481607438555 I157 -G167 0.332052647147083 G167 -C175 0.316951463692416 D158 -H164 0.309307388837251 A149 -A156 0.30726562140436 L140 -Q187 0.299694682981112 G137 -H182 0.299210558211259 R154 -C175 0.285487493330872 L161 -K169 0.28406709604308 C168 -C176 0.282297853944092 L105 -A110 0.278369775770306 C168 -N178 0.278192290744261 L136 -D141 0.277470112891012 T144 -E184 0.274054651704745 R99 -I104 0.256647176572747 S134 -L139 0.243535593936237 S145 -H182 0.229230686576148 V150 -M174 0.22791069137722 G167 -N178 0.214474422421177 V150 -C175 0.21385799414295 D158 -G165 0.213816133653302 S134 -Q187 0.212948020664715 V143 -S180 0.211826214594783 R154 -M174 0.207746921545319 N130 -L135 0.206133625213671 D142 -H148 0.20419287826505 N153 -L179 0.189071887723558 T132 -I186 0.183665410514389 N153 -G167 0.181784424269776 D138 -R147 0.178429640921655 D142 -A149 0.175661951717126 G167 -F177 0.175223850354458 L151 -N178 0.172621035488227 F159 -C175 0.168723944024288 I157 -A163 0.168480214476702 A156 -G165 0.165529006167838 R147 -Q152 0.163824747405555 L161 -C175 0.163773497915208 H166 -M174 0.163511404317871 A155 -G165 0.162404823050057 L160 -K169 0.16161583521538 H148 -S180 0.157503783284841 A155 -H166 0.156663007218244 H148 -F177 0.153318088102902 T144 -Q152 0.15331652693223 D181 -I186 0.15213690915816 F177 -H182 0.150984717357724 N153 -L161 0.14920835417914 S145 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