[Mon Aug 29 17:30:10 2016] >Input file: TMQ05KR1S1G.pdb >TM segments: 126-150_ 227-253 MAIDEN score = 28.0034 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- N133 -Y139 10 H150 -I235 10 I146 -T231 1.75078745110324 I146 -I230 1.4576438956826 L149 -I235 1.20918432924163 F145 -I230 0.99139047872296 L131 -Q142 0.95403160068728 F145 -V229 0.879876681738266 R148 -I235 0.866852547296205 S144 -V229 0.856332018786182 L149 -I233 0.811177715122976 A143 -R228 0.806574183469444 F145 -T231 0.494370047568644 L149 -F232 0.482228606098984 R148 -I230 0.469452196697608 I146 -F232 0.44700517813132 R148 -I233 0.444933751198949 N140 -V229 0.42545745002867 S144 -R228 0.420955591724414 Q147 -I233 0.419825343261062 E132 -T227 0.412165000281546 I146 -I233 0.37953251973969 D134 -T141 0.36076226526465 N133 -C138 0.356513490491574 P135 -N140 0.347578397178497 L131 -N140 0.341846165584366 Q147 -I230 0.31507676001062 E132 -Y139 0.299594655158769 Y139 -S144 0.298064287253085 T141 -T227 0.290640237577496 D241 -M246 0.285193555649442 L131 -A143 0.28086216034704 L149 -T234 0.264138278186023 Q142 -Q147 0.26108294889445 M128 -Q142 0.259180633191757 D236 -D241 0.251038865875475 R148 -D236 0.243821408897844 N133 -Q142 0.239831532457943 P135 -Q142 0.234598002759282 F145 -R228 0.219418583638485 L149 -D236 0.214397115701053 L149 -T231 0.212110212692042 D134 -A143 0.204847418784265 G136 -T141 0.204618554653599 N140 -T231 0.176016852228042 L137 -S144 0.163235504435496 D134 -R228 0.147347244222641 I245 -E251 0.146248696535855 S129 -N140 0.137056536191065 L137 -I230 0.135380111232616 C138 -I230 0.133374806552444 V130 -S144 0.128379776521075 L137 -V229 0.12737057910422 E132 -L137 0.123626142491588 Y139 -R228 0.113421440099375 L131 -S144 0.113184912727618 L137 -Q142 0.109685053754994 N133 -R228 0.108800064176861 E132 -R228 0.103335270162882 S129 -T141 0.0998487240185164 H150 -K239 0.0994076806699606 S144 -I230 0.0948754338665552 L131 -C138 0.0919429733822446 Q142 -R228 0.0864903617918462 L137 -A143 0.086439838918104 T141 -F232 0.0846856395544195 L137 -R228 0.0805250539183518 C138 -S144 0.0780964019742414 R148 -T231 0.0745696605650856 V130 -R228 0.0735902427443493 D134 -S144 0.0699905274812058 V130 -C138 0.0652887231139639 M128 -A143 0.0624121685900674 Q142 -T227 0.0612773525391299 P135 -A143 0.0590128810461135 N140 -F145 0.0561832242472327 R148 -F232 0.0552812988211621 G136 -V229 0.0522321880129211 C138 -T231 0.0507398188177133 L149 -S238 0.0428070814848511 R148 -D237 0.0377204268431104 V244 -N250 0.0361638952945538 T141 -T231 0.0346577583586107 D134 -Y139 0.0279295467826537 T141 -R228 0.0264306743985916 R148 -V229 0.0234038283827434 N133 -F145 0.0223489094414226 E132 -V229 0.0220717608989365 Y139 -I146 0.021245229944741 V130 -V229 0.0167733581737459 N133 -S144 0.0154985346570637 S129 -S144 0.011423909711773 C138 -A143 0.0102190673461411 T127 -Q142 0.0101014815274652 D134 -T227 0.0060934901353944 Q147 -T231 0.00378854644803672 T141 -I233 0.00311343110256157 P243 -P248 0.00194964473048564 P243 -R249 -0.00145698032569497 V130 -T141 -0.00795882904043044 Y139 -F145 -0.0105119652057413 S144 -I233 -0.0128407815573669 M128 -S144 -0.012944700666667 N140 -I146 -0.0144552637566855 T127 -A143 -0.0151554740638309 T141 -V229 -0.0159792700816599 L149 -D237 -0.0162620618909584 S129 -F145 -0.0183773834329313 A143 -F232 -0.0185847024265122 F145 -T227 -0.0229934828241305 Y139 -T231 -0.0236598591591629 F145 -T234 -0.0267336268662941 E132 -A143 -0.0277609900178915 I233 -S238 -0.0277738185942722 I146 -T227 -0.0302865640625378 V130 -Y139 -0.030726684042925 H150 -F232 -0.0308140200344775 S247 -T252 -0.0319472751993575 S129 -Q142 -0.0341433940346775 T141 -Q147 -0.0358911554948655 Y139 -T227 -0.0393923481848426 A143 -V229 -0.0442676866238245 Y139 -V229 -0.0486689095547455 S129 -A143 -0.0493949058896499 V130 -T227 -0.0505132339148577 S144 -T227 -0.0554169928653607 N133 -T141 -0.0605088307144966 D134 -Q142 -0.0614429344855087 L131 -L137 -0.0617541136721798 S129 -Y139 -0.062407790881545 V130 -F145 -0.0654844077060952 Q147 -R228 -0.0679073702768943 L131 -T227 -0.0708623596855222 E132 -S144 -0.0711658537055104 L137 -T227 -0.0733120603487092 R148 -S238 -0.0756896280992716 M246 -E251 -0.07615011709483 S129 -R228 -0.0784461560737688 Q147 -T234 -0.0894248368030746 Q147 -D236 -0.0896642663320414 L131 -T141 -0.0905942679742164 L131 -F145 -0.0906316317850813 L137 -T231 -0.0963689996277025 S144 -T231 -0.0963696043496567 S144 -F232 -0.0966094061819536 S247 -M253 -0.0983818042390903 Q142 -V229 -0.100388705165174 H150 -R240 -0.10383196076841 E132 -Q142 -0.103954280791286 D134 -V229 -0.10722826377525 L131 -G136 -0.10845118220129 I146 -R228 -0.112723333991439 V244 -R249 -0.124555087719741 H150 -T231 -0.126239459322788 L131 -R228 -0.127374761776717 C138 -F145 -0.127754342746996 E132 -C138 -0.132801251316975 N133 -I230 -0.135287487912172 N133 -V229 -0.136857445678172 I235 -R240 -0.150287623734045 P135 -T141 -0.153448419935042 L149 -I230 -0.154539284158043 Q147 -F232 -0.157854224056422 L131 -Y139 -0.159700743214052 L131 -V229 -0.160052288155719 P248 -M253 -0.168129921452958 C138 -V229 -0.169933645905459 N140 -T227 -0.172150333248732 I146 -T234 -0.17412098842709 Y139 -F232 -0.17720664910749 Q142 -T231 -0.177489016972773 F145 -I233 -0.180187655236577 E132 -N140 -0.190372580580678 N133 -T227 -0.195370033811824 K239 -V244 -0.197922462046492 N140 -R228 -0.201056550319106 A143 -T231 -0.204317920690896 Q147 -I235 -0.206133698057641 E132 -T141 -0.206229311782286 Y139 -I230 -0.206983326381215 T141 -I146 -0.211242858987788 A143 -T227 -0.222173553531522 N133 -A143 -0.225330859790241 V130 -A143 -0.234204361781782 Q142 -I230 -0.237892430525474 T141 -I230 -0.241095972416757 I146 -I235 -0.25400763834747 V130 -N140 -0.255998240178906 C138 -T227 -0.26923617913805 C138 -R228 -0.270617691957236 H150 -I233 -0.272422678587998 V130 -Q142 -0.282865741341721 N140 -I230 -0.286081332240883 A143 -I230 -0.286537015819869 I146 -V229 -0.310346807023995 I245 -N250 -0.317885138438498 H150 -S238 -0.318536366054328 Q147 -V229 -0.319539101496403 H150 -D237 -0.396204487607143 F145 -F232 -0.407989343992559 R148 -T234 -0.435179008032427 H150 -T234 -0.586338053494365 H150 -D236 -0.615201579874023 N133 -N140 -0.934883957035027 D134 -N140 -0.953833563698582