[Fri Aug 26 17:44:12 2016] >Input file: TMQ0RHZ1M1D.pdb >TM segments: 418-442_ 446-467 MAIDEN score = 1.7357 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L435 -M441 1.200903245339 E434 -L448 0.808977849996982 P447 -V456 0.672053169107171 L448 -V456 0.666502705856556 L451 -H459 0.652581599351745 L418 -D423 0.613662354214343 F439 -L448 0.533870477866441 L436 -L448 0.525233616201001 L435 -S449 0.524280391523068 L451 -A458 0.522450593199204 L435 -L448 0.518103099032883 A458 -V463 0.498803247833385 L451 -V456 0.474669017785787 M441 -L448 0.471022506350068 L436 -S449 0.432568933918486 L436 -M441 0.409907483552355 P447 -A452 0.389258006977194 L451 -A457 0.361458245281848 L435 -G442 0.34330834675333 E434 -P447 0.335085072416501 V446 -V454 0.324014066605828 L448 -V454 0.317405334051104 A452 -G462 0.309563449207205 P447 -L453 0.306562606699149 S449 -V456 0.304312905259234 S449 -A457 0.303041098710155 D423 -A428 0.301595367168301 L448 -L453 0.299671210370942 S449 -H459 0.276406847726613 A461 -A466 0.275193786681024 A452 -A458 0.252688457868929 A452 -A457 0.247816737173744 L435 -G440 0.237584434460612 G442 -P447 0.229061737245021 G442 -G455 0.225770810922893 G455 -D460 0.225581571931583 S433 -P447 0.210751716458429 E434 -M441 0.201847929968792 P432 -G442 0.201767501632021 V454 -D460 0.192427410169452 S425 -S433 0.190492116679314 A457 -G462 0.184643243539953 G442 -V456 0.182043752501971 L448 -H459 0.181039884423487 S450 -V456 0.179978120576768 V427 -E434 0.175443200694526 S438 -L451 0.174037526157484 V427 -S433 0.173794370634134 V456 -A464 0.164202674912928 D423 -V430 0.163609435457451 S419 -L453 0.163370243554396 A452 -D460 0.161623199427906 V454 -H459 0.161343295275985 F439 -V446 0.157877635201774 S450 -S465 0.157606197186089 F439 -A457 0.154681378672038 G462 -L467 0.152603957796647 G421 -H429 0.151599477832911 A457 -S465 0.148940730637065 F439 -P447 0.143764124076764 L431 -G442 0.143515930499923 I437 -A452 0.138591023370881 L453 -G462 0.136984343894884 L431 -L436 0.135378926478145 V446 -H459 0.134423232321297 E434 -S449 0.129788861228121 M441 -V456 0.128329753600175 L435 -L453 0.115481737795879 S419 -V427 0.114318028362743 L435 -V446 0.11320380249178 S433 -L448 0.111854045740541 L436 -L453 0.110504580827081 Y426 -S449 0.108886317666617 S419 -A452 0.107254929006166 P447 -H459 0.106339367434105 S433 -S438 0.10386547436087 H459 -L467 0.10077744727039 L418 -L453 0.0996997117375789 H429 -E434 0.0980163432595039 G440 -V456 0.0972110645078279 F439 -A458 0.0967320585907547 P432 -M441 0.0964487603875204 V446 -L451 0.0955745022145558 L435 -V456 0.0949577326524531 S450 -A464 0.094131558493183 D423 -H429 0.0940041644830609 I437 -A457 0.0936741204182541 S449 -A461 0.0909259397001287 S425 -L431 0.0899864494193989 D423 -P432 0.0857356582490425 L418 -S425 0.0837439502649047 A458 -L467 0.0829538775384038 L451 -G462 0.0817891581937046 A457 -A466 0.0806998141172013 M441 -A452 0.0801190109739158 V427 -P432 0.0795970193227562 A428 -S433 0.0783840273638843 V430 -L435 0.0741425220770701 A452 -A461 0.0729181596748205 G442 -S450 0.0723610976170082 P447 -D460 0.0697908172836683 V456 -A466 0.0697107555179795 S424 -L431 0.0686578364375201 S433 -S450 0.06797429034446 D423 -L453 0.0658956169939846 A457 -A464 0.0650519523424133 F439 -V456 0.0628424775504275 L451 -A466 0.0613058332747238 S433 -S449 0.0602068202918499 G442 -L453 0.0597508915849473 I437 -L451 0.0578464929752167 S419 -S425 0.0567867044499357 S449 -V454 0.0522601955935098 S450 -V463 0.0517777527549494 V454 -V463 0.045579016046454 S449 -D460 0.0450772369529116 S438 -G455 0.0418903676715843 E434 -F439 0.0384321135784704 V446 -A457 0.0376555249362713 I437 -S449 0.0341769974059805 G440 -S450 0.0340069596010862 G455 -A466 0.0338058611072891 D423 -S433 0.0323991710263323 G440 -A457 0.0319114215770715 I420 -H429 0.0307330926119613 I437 -P447 0.0274611514151752 S433 -F439 0.0233599388914065 G440 -P447 0.0216862529942055 S438 -A452 0.0213249035928702 G440 -A452 0.0208287387924542 L436 -G455 0.0200251810170688 V422 -L453 0.0197852611065361 V427 -L453 0.019254363080468 F439 -S449 0.01911573416094 G455 -A464 0.0184625812229954 S425 -E434 0.0174029121677917 I420 -L453 0.0170868290437625 E434 -V446 0.0170112822935722 F439 -G455 0.0128884052108416 V427 -L435 0.0120840846068533 H459 -A466 0.0118070907820149 V422 -L431 0.00837852208178891 I420 -A428 0.00663029879929256 E434 -V454 0.0066069556980346 V446 -A458 0.00537991181463848 H429 -L435 0.00504100226042503 P447 -G462 0.00359547437016072 G442 -A457 0.00229466840725046 E434 -L451 -0.00265482583481047 P432 -S449 -0.0035886907995657 P447 -A461 -0.00448325468935096 A458 -S465 -0.00448492534400158 G455 -S465 -0.00872425358292084 V454 -A461 -0.00980601681895887 G421 -Y426 -0.0103157978478311 A452 -V463 -0.0124236740341985 P447 -V454 -0.0126612484233617 S425 -V430 -0.0154080779200392 D423 -L431 -0.016637620425425 L451 -S465 -0.0177591950390212 S449 -G462 -0.0188242933667128 G442 -L451 -0.0194100139565587 I437 -V446 -0.0211639355641209 L436 -L451 -0.0255647851513103 V454 -G462 -0.0268351904255462 S419 -L451 -0.027052373693591 P432 -G440 -0.0287743727474958 S450 -D460 -0.0300448398612314 F439 -A452 -0.0310963717898294 I437 -V456 -0.0324658841973102 M441 -L453 -0.0334737572609063 L453 -D460 -0.0343784452866984 S450 -A461 -0.0355113109232237 Y426 -P432 -0.0355209546137812 S433 -G440 -0.0405111274650487 S438 -A458 -0.0415610682902248 E434 -G442 -0.046907218941235 V456 -S465 -0.0485822296913967 L435 -L451 -0.0520083349408367 S438 -V454 -0.0563652870597666 Y426 -L431 -0.0568617318297999 V422 -E434 -0.0581150743606633 D460 -S465 -0.0593408726069639 L453 -V463 -0.0600342433502439 A428 -E434 -0.0605603110406543 F439 -L451 -0.0614124951803214 M441 -P447 -0.0616368886561378 L418 -Y426 -0.0618712033229492 L436 -A458 -0.0662489209067276 P447 -G455 -0.066825307503561 G442 -V454 -0.0670185498990827 L431 -M441 -0.0678601387860036 E434 -S450 -0.0717434226038544 V422 -P432 -0.0723948966269845 S438 -S450 -0.0727034200692316 L453 -A461 -0.0727819988685745 G421 -A428 -0.0741468013869354 L451 -A461 -0.0741655403769208 G421 -V430 -0.0755360682944444 Y426 -A452 -0.0791800655731423 D423 -E434 -0.0807296625198712 G455 -A461 -0.0854301996434361 L435 -A452 -0.0855511236121647 L448 -D460 -0.0868862549826881 V422 -A428 -0.087092843399283 L435 -V454 -0.0889683750249564 V456 -G462 -0.0909353027592914 E434 -L453 -0.0933028673624263 G442 -A452 -0.0943085082608155 S419 -A428 -0.0964446409243127 S433 -M441 -0.0970580735352824 M441 -S450 -0.0970592130986629 V422 -V430 -0.0981024227830515 F439 -V454 -0.101288303734294 L448 -A461 -0.101354815710533 L436 -V454 -0.10266538789095 L418 -V427 -0.103485048122448 L436 -A457 -0.105127919998439 L453 -H459 -0.106208140622472 G455 -G462 -0.107320406536073 L435 -A457 -0.10920961280906 L431 -L448 -0.110898726892769 S433 -A452 -0.111906624727538 G440 -V446 -0.112405101088099 P432 -L448 -0.112572017180922 S449 -G455 -0.115670234419238 G455 -V463 -0.117142593512045 G442 -S449 -0.124775134263188 L435 -S450 -0.128072834570609 S433 -G442 -0.129347839697498 L453 -A458 -0.133978334465045 Y426 -L435 -0.139375374662349 S450 -G455 -0.140532041404817 M441 -V454 -0.143130544560401 P447 -A458 -0.146126038098181 A461 -L467 -0.146660965987538 S438 -V456 -0.148054395426076 I437 -L448 -0.148551596682437 V422 -H429 -0.149924201490665 G440 -S449 -0.150209280285918 G442 -L448 -0.152524586875421 A457 -V463 -0.152688005623642 S450 -G462 -0.153139990983477 L436 -V446 -0.157397765392579 I420 -V427 -0.162031748256418 E434 -G440 -0.162735407977918 S438 -A457 -0.163890490519699 L451 -A464 -0.163911354640875 F439 -S450 -0.164506384953483 D423 -A452 -0.164701263655796 L448 -A457 -0.166856889728376 L418 -S424 -0.166956271937842 Y426 -E434 -0.167442723980369 E434 -V456 -0.167501891278937 D460 -L467 -0.169631100953314 S424 -P432 -0.170048337729647 Y426 -L453 -0.173265543164294 D460 -A466 -0.17583760789388 V446 -V456 -0.177694656522569 I420 -S425 -0.181631297435569 P447 -A457 -0.186854786739323 M441 -S449 -0.191941187585669 L448 -A458 -0.193757734359826 L448 -G455 -0.193789959040167 V422 -V427 -0.197336451061 I437 -S450 -0.197930257541305 A458 -A466 -0.198695072864574 I420 -Y426 -0.204040607748812 L436 -V456 -0.206861184701273 G421 -V427 -0.209861599851636 S438 -V446 -0.217855543348598 L451 -V463 -0.231394611830152 S425 -P432 -0.231977650969605 V446 -G455 -0.234642577463588 S438 -P447 -0.243532889744134 H459 -S465 -0.244564910585791 A458 -A464 -0.248216829251818 V446 -D460 -0.252298272676321 I437 -G442 -0.255592515870498 M441 -V446 -0.26262983230186 E434 -A452 -0.263854687042396 L436 -A452 -0.27274287006676 S419 -Y426 -0.282382343533934 V446 -A452 -0.288888655631373 L451 -D460 -0.290562716988628 V446 -L453 -0.295741728650974 Y426 -S433 -0.297098951215244 V456 -V463 -0.297341372753893 S450 -A457 -0.297349293126242 S424 -V430 -0.334255668211348 G440 -L448 -0.338062743956634 S450 -A458 -0.338886728779351 S438 -L448 -0.347313420892889 L436 -S450 -0.35648413328744 S419 -S424 -0.364428261698068 S450 -H459 -0.370227971037417 S424 -H429 -0.371211722865027 L435 -P447 -0.398376373682003 L436 -G442 -0.403079961859697 A452 -H459 -0.413407594553005 S449 -A458 -0.428837748377196 H459 -A464 -0.459194093610621 V456 -A461 -0.462297324097243 S438 -S449 -0.540265631688801 L436 -P447 -0.547365881852506