[Mon Aug 29 16:47:53 2016] >Input file: TMQ17QD6M2G.pdb >TM segments: 105-113_ 116-123_ 129-162_ 305-311 MAIDEN score = 25.2703 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C121 -C135 10 C135 -E149 9.37201683595231 C135 -V147 2.44651209497757 Y110 -T161 1.24616256397776 C121 -E158 1.17363961102057 G107 -C121 0.920952105643645 L116 -D138 0.870381133199813 C121 -T159 0.844020044122038 Q111 -Q118 0.80707366486555 K122 -A136 0.804897864331158 V130 -T154 0.710871656954448 E113 -Q118 0.705912202343721 N106 -K157 0.691288814554056 A120 -D138 0.666719209530335 S134 -G146 0.656885588371076 N106 -A120 0.646186821831784 G107 -S160 0.635571279055916 C121 -G133 0.600233193043559 Q123 -Q156 0.564641708545304 E113 -A119 0.550636057148157 C135 -H148 0.49382317331754 C135 -D145 0.469457455663902 K122 -K157 0.468282312606796 S131 -S155 0.467033884965305 A136 -S143 0.445831433444249 Y110 -S160 0.424554369156521 C135 -E153 0.395586570627326 E108 -C162 0.393179032585926 K122 -E149 0.39166951590489 Q111 -K122 0.389929460427443 C121 -S134 0.387929310208913 S109 -T159 0.382619203994273 E108 -K157 0.382484778329502 C121 -K157 0.356153566781416 H148 -S155 0.346130210487214 R117 -G140 0.337830986049166 L116 -G140 0.334575606369084 A119 -T137 0.332841874339046 Q111 -T161 0.3306451316939 E108 -Q123 0.323151301278062 A120 -S141 0.321229962335607 R117 -D145 0.317022411671764 A120 -G144 0.316499794006203 Q118 -A136 0.316458527060654 A139 -G144 0.300124383802164 A119 -G142 0.291582656660405 G107 -K122 0.28072582833862 C135 -G144 0.276770762287892 E108 -C135 0.270415627272782 G107 -K157 0.265371256853369 E113 -C135 0.264185767409597 V130 -S155 0.260641726233234 C121 -E153 0.257703413904716 N112 -C135 0.256722281361054 G107 -C135 0.248234584687202 Q111 -E158 0.247060938638018 T154 -T159 0.245715272228297 A120 -A139 0.244503419023112 A119 -G140 0.243753546566299 Q111 -Q123 0.238449176759342 N112 -A119 0.231203462628836 S131 -S151 0.229320127818356 Q111 -A119 0.226686150617356 C135 -Q156 0.223689583686866 V129 -S155 0.222898692413218 G133 -E158 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