[Fri Aug 26 17:42:00 2016] >Input file: TMQ27ID8M1D.pdb >TM segments: 497-524_ 526-552 MAIDEN score = 22.5146 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F539 -V546 10 Y540 -V546 10 C530 -E535 10 A541 -V546 1.40133892466809 L529 -K534 1.11926785999459 V512 -D542 0.937853182993881 F539 -V547 0.921573245947523 L524 -L529 0.70837868108867 L529 -C537 0.676206622870296 E526 -A532 0.652868127581062 F539 -T544 0.648653486530495 F523 -G528 0.646396565462348 L513 -Y540 0.645594251284719 D520 -C530 0.604082358634487 C537 -D542 0.542652692183884 F523 -A532 0.536696363366492 T506 -D549 0.508983952465364 R516 -Y540 0.476676003877603 C530 -C538 0.448366736753925 E526 -C537 0.447102671303989 E502 -M551 0.44618155489106 F523 -L529 0.437046589925479 Y540 -V547 0.420934056955794 R517 -C538 0.419199753471311 E526 -A531 0.39209428980924 C530 -E536 0.384965309637325 K503 -M551 0.372277473411175 L513 -D542 0.353912671428361 R516 -L521 0.3330624504196 R517 -L522 0.31950341806523 V512 -R517 0.316206988698778 L519 -L529 0.308889621445612 S499 -A552 0.307654092102445 L529 -E536 0.306621300814117 C530 -V546 0.305973296346205 G518 -A541 0.304574676949319 T506 -M551 0.298472528718569 C538 -V546 0.290864062690017 E510 -R516 0.283637765906484 R516 -C537 0.264479545231943 R517 -D542 0.263253677538267 E536 -V546 0.259537313921012 V511 -M551 0.25105089259567 G518 -Y540 0.244977944508168 L513 -T544 0.242103683660328 V511 -R516 0.241161616811086 V511 -D549 0.240567802315804 G527 -A532 0.227553225604656 D520 -K534 0.227426552370435 Q514 -R548 0.226617873555489 K534 -D542 0.225820037641192 K534 -Y540 0.222241502977659 S509 -V547 0.220329094740619 D520 -A531 0.201147701143806 D520 -A541 0.194648441177918 Y540 -R548 0.193768185702247 F523 -C538 0.191222325765163 R516 -V547 0.190268998845367 E535 -A541 0.187035091888152 V511 -D542 0.185409452175993 N515 -L529 0.184611364962997 L505 -S550 0.18428712212331 L519 -D542 0.182938688167922 L513 -A541 0.181033564405961 F523 -K534 0.175634341646172 S497 -M551 0.172430294063682 K534 -A541 0.166538675090433 T506 -Q514 0.165867719754689 L529 -E535 0.165185516481159 G528 -A541 0.161636831452177 F523 -H543 0.1608367527837 C530 -G545 0.158605561271372 E535 -V546 0.157852654102546 S509 -F539 0.157581798614458 E510 -V546 0.156198521346916 G518 -A532 0.152869720558698 L519 -H543 0.152105230907209 K503 -L508 0.151023673158493 R516 -L529 0.150829243316753 A532 -H543 0.150005363410749 A531 -H543 0.149450050793132 E510 -V547 0.146174733835143 R516 -E535 0.145518073507236 D520 -G527 0.142465815231139 N515 -A541 0.139429421403223 L521 -C537 0.138825736276897 V512 -G545 0.138617031809933 G528 -E535 0.136367736364536 E526 -K534 0.134520350809519 C530 -C537 0.133058376070388 L522 -C537 0.131311237990642 V512 -R548 0.130985279089625 K503 -E510 0.130026702009681 S504 -V512 0.130016466426941 C530 -H543 0.129132465835389 E510 -R517 0.124819868222916 R516 -R548 0.122348641746415 R517 -F539 0.122110600417705 G527 -K534 0.119288977384545 V498 -A552 0.118875819204473 V512 -H543 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