[Fri Aug 26 17:42:29 2016] >Input file: TMQ27ID8M3D.pdb >TM segments: 479-510_ 512-535 MAIDEN score = -11.5871 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F523 -L529 0.701952126775801 L519 -L529 0.607202013460299 F523 -A532 0.562787124213306 L491 -K496 0.51248127051737 R516 -L529 0.456593141435177 L529 -K534 0.409431982876846 E526 -A531 0.407711806006624 A486 -A493 0.375474941213996 R517 -L529 0.367922677686781 L521 -G528 0.359343522420507 C530 -E535 0.353085895784048 V512 -R517 0.343283252417564 R517 -L522 0.335678487471014 D520 -C530 0.291283690232937 R516 -L521 0.27391729109293 E510 -R516 0.273567000201169 L529 -E535 0.271287750666867 L521 -E526 0.262822262356972 E510 -R517 0.245882519430738 L519 -G528 0.242234694824934 D520 -G527 0.227830158141764 N515 -G528 0.226778614203458 Q514 -L519 0.203392758413397 L522 -G528 0.191292528466625 F523 -K534 0.178495059837522 D520 -L529 0.175776715759657 L521 -C530 0.173219608806128 S497 -L505 0.172752431132842 T489 -K496 0.165340721410448 G518 -A531 0.160851664294045 Q484 -G492 0.16077574861534 E481 -A486 0.1574208990326 D520 -E526 0.152357796960957 E526 -A532 0.150236224347917 S507 -V512 0.141036013039621 A485 -D490 0.127870464200397 E502 -E510 0.126535662506442 K496 -K503 0.126184538513036 T489 -L494 0.123441196253182 R516 -A531 0.122855308207041 K503 -L508 0.120252939927922 F523 -C530 0.116955497262823 E526 -E535 0.116676797687914 Q514 -L522 0.115990064691832 H488 -K496 0.114715866702751 D490 -E495 0.114568634218009 T506 -N515 0.114053727675927 D520 -K534 0.113253223507365 S509 -R517 0.111383703337057 G518 -C530 0.108621469431561 R516 -A532 0.10648488900757 L491 -S497 0.105450808579469 G518 -G527 0.105400694652069 G518 -E526 0.102618919569339 L513 -C530 0.10157893013578 L522 -A532 0.100110455646897 V512 -L529 0.099641869418083 R516 -E535 0.0950285165538127 L522 -L533 0.0944510482098688 R517 -G527 0.0939706379140919 E526 -L533 0.0935910627874438 K496 -L501 0.088312956079498 A486 -L494 0.0849462271336916 E502 -L508 0.0838303530510467 G527 -E535 0.0830987040299438 E481 -T489 0.0829472749997286 E510 -G518 0.0813934908949574 L483 -L491 0.0797984420936446 R516 -G527 0.0789819819517443 L491 -V498 0.0756219097298627 E495 -E502 0.0743310477507968 Q514 -G528 0.0736946699794951 G527 -A532 0.0718451041321035 S504 -V512 0.0715554027429395 L505 -Q514 0.0687030327500819 A500 -L508 0.0680404282287679 D520 -G528 0.0672262541063811 L505 -L513 0.0649027409975949 Q479 -I487 0.0637652495001682 A493 -V498 0.0614909798645069 S507 -N515 0.0584379663253045 L513 -L529 0.0558234346884241 G528 -E535 0.0539828777206228 G492 -S497 0.0537273762622654 L501 -S509 0.0521289215443428 A485 -A493 0.0521130344829179 L508 -R516 0.0493431536939646 Q482 -L491 0.0483695323202449 S509 -G518 0.0475441429916241 L494 -S499 0.0457062810305586 A500 -S509 0.0448827223336306 K503 -E510 0.0413201473640523 K496 -S504 0.0412555595840525 L494 -A500 0.0392256328753129 L513 -L519 0.0389266721954495 L505 -V512 0.0295763653488779 I487 -K496 0.0252420529910737 V498 -K503 0.0247865675005503 T506 -L513 0.0240593108602685 G518 -L533 0.0233416329176248 L522 -L529 0.0232793230021402 T506 -R517 0.0224827791628737 D490 -S497 0.0138164862882185 R516 -G528 0.0137825095822963 E495 -L501 0.0108156389550602 V498 -T506 0.00911446699452867 K525 -A532 0.00405655227093438 N515 -D520 0.00353605206848151 R516 -L533 0.00248437890753284 Q479 -A486 0.00106201753454771 F480 -T489 0.000833930469785749 S504 -E510 -0.000525197902470298 L491 -S499 -0.000806715402513081 G518 -K525 -0.000828027152560029 S509 -L519 -0.00117266588565568 Q479 -A485 -0.00158772247175509 K525 -A531 -0.00678517791102573 Q482 -H488 -0.00942556488135704 G518 -A532 -0.010120916400524 S499 -L508 -0.0115991607995642 L521 -G527 -0.0136424224984077 S497 -S504 -0.016048594259956 L519 -A531 -0.0162873105976384 K525 -L533 -0.0169522899286809 R516 -K534 -0.0204772820772199 L513 -G528 -0.0229181113313945 L522 -A531 -0.024547072286305 Q482 -D490 -0.0251401574813563 L519 -L533 -0.0255385471473329 Q484 -E495 -0.0261557367944517 R516 -L524 -0.0266095030950604 E502 -S507 -0.0290540796568726 S499 -S507 -0.0296967115685449 L508 -N515 -0.0327312917298279 L524 -A531 -0.034157540824576 Q514 -L529 -0.0355171158932217 S509 -R516 -0.0397913829511598 S497 -T506 -0.0414985893639387 A485 -E495 -0.0451330391748259 T506 -R516 -0.0512787105643955 L524 -L533 -0.052041636522592 R517 -F523 -0.053292368108558 K503 -S509 -0.0567791120999113 Q479 -Q484 -0.0570433347051013 N515 -L529 -0.0572436329988677 R517 -K525 -0.058256283407065 S497 -K503 -0.0591460344672451 G528 -L533 -0.060361329304218 E502 -S509 -0.0607690925009106 E495 -A500 -0.0613313197870724 S509 -Q514 -0.0620769631945065 F523 -G528 -0.0624160851988176 V512 -L521 -0.0626362020429445 Q514 -D520 -0.0631464434634474 L513 -F523 -0.0647585765232623 V512 -D520 -0.0648220775849611 E481 -H488 -0.06579139231037 A485 -G492 -0.0680555885494787 R517 -A531 -0.0689555881811579 T489 -E495 -0.0706414230056112 R517 -G528 -0.0707561687573737 A486 -G492 -0.0722149138883258 A500 -S507 -0.0736779244068995 R516 -E526 -0.0748922489174837 S499 -T506 -0.0750283252627852 L521 -A531 -0.0756831342700242 S507 -R516 -0.0764251285347353 Q484 -D490 -0.0768016693831093 Q484 -A493 -0.0779419416690534 Q484 -L494 -0.0800897745343478 A485 -L491 -0.0802933717397547 S507 -L513 -0.0821764555397095 L521 -L529 -0.0839513853953431 A486 -E495 -0.086325389416686 H488 -L494 -0.088856403293105 S507 -Q514 -0.0904407154905547 R517 -L533 -0.0914130892492011 G492 -V498 -0.0941183253678317 L521 -L533 -0.0965305570088919 L501 -L508 -0.0974781987923343 E510 -L519 -0.100901352385779 S507 -R517 -0.102247674527586 L483 -G492 -0.102709597564479 R517 -A532 -0.104934743034091 G518 -G528 -0.106215762028638 L521 -A532 -0.107764470255506 V498 -S507 -0.109424385639706 L519 -G527 -0.109626852274694 D490 -K496 -0.112971405647308 L505 -E510 -0.113827064879416 Q514 -F523 -0.115218129874105 N515 -L522 -0.115822722027846 N515 -L533 -0.121423682590144 L508 -R517 -0.121756293155986 S504 -L513 -0.122500148881016 V512 -G518 -0.122522472969843 N515 -L524 -0.12322555952777 F480 -A486 -0.128644170268455 L519 -K534 -0.130225550878609 T506 -Q514 -0.131040539987171 K496 -E502 -0.135559089042989 F523 -L533 -0.135716291413953 G527 -K534 -0.137728687718843 F480 -H488 -0.13840434500392 N515 -F523 -0.139957631690054 S497 -E502 -0.14002847406977 E481 -L491 -0.140997388001361 H488 -E495 -0.14147630491987 L524 -K534 -0.142768016735043 T506 -V512 -0.143218422338097 I487 -E495 -0.143860384921925 D520 -K525 -0.145771045402168 L513 -L521 -0.147601411738419 K503 -V512 -0.151252600466267 Q514 -L521 -0.151448045662234 E526 -K534 -0.151976278691961 L513 -L522 -0.15288850233914 Q484 -T489 -0.154520992169037 L524 -A532 -0.156408170497238 R517 -E526 -0.15715635582115 L501 -E510 -0.157158802385895 L522 -C530 -0.162361318921787 Q482 -I487 -0.165148949648564 V498 -S504 -0.165285121444459 A485 -L494 -0.165357795404233 L483 -D490 -0.176457734874596 Q482 -T489 -0.178872823357521 K503 -L513 -0.180543168502346 D520 -A532 -0.182115902986749 L519 -E526 -0.193094268623603 L522 -G527 -0.193305470376742 E481 -I487 -0.196507470940293 E510 -N515 -0.197162364813067 L519 -K525 -0.203886213766286 D520 -A531 -0.207356293120421 L483 -H488 -0.213626832989934 R516 -F523 -0.214289268783963 A500 -T506 -0.220462059729664 D520 -L533 -0.221312391378159 L519 -A532 -0.23599666745056 G518 -L529 -0.238230618431624 I487 -G492 -0.24072088181872 G528 -K534 -0.241378080809986 E481 -D490 -0.24300235821086 A500 -L505 -0.243434094754853 K525 -C530 -0.247373293602405 V498 -L505 -0.251748568828518 R517 -L524 -0.251874786923605 V512 -L519 -0.254101466019897 F480 -I487 -0.254828662247165 N515 -L521 -0.254890950478343 L483 -T489 -0.257894266881319 K525 -K534 -0.258392725354819 D520 -E535 -0.259473683263064 L501 -T506 -0.261552949565154 G518 -F523 -0.264233244702783 G527 -L533 -0.264610031512881 E510 -D520 -0.267258729846585 S509 -N515 -0.26787804766721 L524 -L529 -0.27575763632759 R516 -L522 -0.283253995964409 L513 -D520 -0.288881314935961 N515 -C530 -0.293242711533805 L513 -G518 -0.294509812985073 A486 -L491 -0.303116545371625 S499 -L505 -0.306039394556002 L501 -S507 -0.325088458273274 I487 -L494 -0.329501944536253 G518 -L524 -0.337557566432397 I487 -A493 -0.339391189921253 L508 -Q514 -0.340898835045133 L508 -L513 -0.383979313335344 R516 -C530 -0.387238303239712 L519 -L524 -0.397253148208964 Q479 -H488 -0.415027668928992 F480 -A485 -0.415063027499263 S499 -S504 -0.434308713756822 L519 -C530 -0.44911383097572 F523 -A531 -0.4533078267079 H488 -A493 -0.503328808812786 Q484 -L491 -0.504656633342095 L524 -C530 -0.545027527816252 S504 -S509 -0.559719878446513 R517 -C530 -0.609003616477886