[Mon Aug 29 18:06:55 2016] >Input file: TMQ3K9U6M1G.pdb >TM segments: 339-359_ 370-394 MAIDEN score = -6.5544 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- N383 -L388 0.924868601069781 I382 -L388 0.731197004415081 N383 -G390 0.533776813227221 L381 -N387 0.50381885749796 S384 -G390 0.38435342087161 R373 -V378 0.374777900993267 K356 -A380 0.353703675252773 S359 -A377 0.343676869114043 S359 -A380 0.332890552608159 N387 -P394 0.323772221714588 L388 -A393 0.299061971214518 R373 -I379 0.298590783907883 N383 -F391 0.261636266816298 A352 -S357 0.245062348300754 L381 -G390 0.243670618939829 I382 -G389 0.215909703605542 S384 -V392 0.211006995360376 A358 -A377 0.19682986712473 F350 -F355 0.182171402516449 D371 -A377 0.179146194548422 A344 -G354 0.16714263624038 F350 -K356 0.166520629923386 A380 -G390 0.164857572477793 A358 -G390 0.161636831452177 A377 -S384 0.153884471038728 G340 -C349 0.151376173921286 A358 -I379 0.150331649212497 S357 -L381 0.148219723959764 S384 -P394 0.145128770691632 S384 -A393 0.136537682082839 G386 -P394 0.136183781980078 S359 -N387 0.129799233055099 A351 -A358 0.126237627461899 S359 -A372 0.117047722384681 G386 -V392 0.113458812622505 I379 -G390 0.111621128350295 A377 -G389 0.108927096637083 G340 -A347 0.107547315954475 V378 -V385 0.105830339648776 N383 -P394 0.105306354141316 A375 -N383 0.104181151489365 A358 -G389 0.103515170361736 I348 -G354 0.103195416002661 A351 -S357 0.0989490682772889 S359 -R373 0.0970421806982862 A376 -S384 0.0942006712017456 S357 -A377 0.0939717852804471 I379 -G386 0.0859512654270111 I382 -G390 0.0846555821811048 N387 -A393 0.0812189674138781 K356 -S384 0.0809079988665169 S359 -A375 0.0807252758806412 V378 -G389 0.0772779448478966 V378 -L388 0.0752152426261743 S359 -V385 0.0744106119118166 A377 -N387 0.0738350913586086 G339 -I348 0.0724845786138486 A377 -G386 0.072305010938345 F343 -A351 0.0688397725974959 A358 -R373 0.0638522474041928 A352 -A358 0.0624390108390247 V378 -N387 0.062370925158115 V378 -G386 0.0605533161959428 I379 -N387 0.060325288726407 I348 -L353 0.0540890517243007 A376 -N383 0.0534735810049112 A358 -N383 0.0526124192480836 A344 -A352 0.0512229468356464 L353 -A358 0.0499364676971328 G339 -A347 0.0496237727842495 A358 -A376 0.0496208707751932 L381 -L388 0.0486604472587507 L381 -G389 0.0447733134831134 G340 -I348 0.0430982558757753 I382 -V392 0.0426270462034228 A358 -I382 0.0393816505615758 S357 -N383 0.0391594382481761 I342 -C349 0.0362057473866169 C349 -K356 0.0336740480990274 S359 -I379 0.0295742392736882 A372 -A380 0.0280183118283919 S357 -S384 0.0276045176394106 I379 -V385 0.027569484719586 P341 -F350 0.0198411344435008 K356 -V385 0.0195876650724207 A358 -N387 0.0189574950602838 A380 -L388 0.018191711492749 S359 -N383 0.0176195643284434 G386 -F391 0.0114422791867153 V385 -P394 0.0111042794983696 S357 -G389 0.00679874395900981 I379 -G389 0.00615742994713342 G340 -F345 0.00251968614886433 G354 -S359 0.00181075724022151 S359 -G389 -0.00148937627436929 K356 -G389 -0.00493594109193962 A347 -F355 -0.00576194437092004 A377 -V385 -0.00580745594322973 A380 -G386 -0.00997530798830848 I348 -F355 -0.0127137670335142 D371 -V378 -0.0137678995448063 S359 -I382 -0.0145442643311391 I382 -A393 -0.0174899776264492 S359 -I374 -0.0175225653544077 V385 -A393 -0.0219680505054796 F350 -S357 -0.0262790417127645 A358 -V385 -0.0274066189614419 I348 -K356 -0.0284781412067141 A358 -V378 -0.0295319386414017 A344 -L353 -0.0314077735497662 L381 -F391 -0.0336304763027586 G386 -A393 -0.0383861846460238 S359 -G386 -0.0439283587747687 S357 -G390 -0.0463185320588373 G339 -A344 -0.0484308605970956 V385 -G390 -0.0527556609627862 A380 -N387 -0.0532128183422931 K356 -N383 -0.0568439564367997 I379 -F391 -0.0570204892051276 A377 -N383 -0.0604944363648288 D371 -I379 -0.0605691229425229 V378 -N383 -0.0655406762321216 I342 -F350 -0.074013858111039 A347 -G354 -0.0746839613508525 S357 -A376 -0.0754442434048972 A380 -G389 -0.0807970070207324 S357 -I379 -0.0813119015366809 N383 -A393 -0.0819054491294975 A375 -I382 -0.0853232252653857 V385 -V392 -0.0867281651563725 S357 -I382 -0.0897258290923013 I379 -L388 -0.0936739603679193 L370 -A377 -0.0980480683750824 L370 -V378 -0.100074200417998 F345 -A351 -0.101059428603514 S357 -V385 -0.101613345788736 S359 -L381 -0.106327923621826 R373 -L381 -0.106524760527027 G339 -V346 -0.109125744928035 F343 -I348 -0.1097507219555 R373 -I382 -0.110247652397835 P341 -C349 -0.110456368944279 F343 -A352 -0.11218079800127 P341 -A347 -0.113971895081812 A351 -K356 -0.114148002869685 G340 -V346 -0.116206319727645 A380 -V385 -0.118258364984423 F345 -G354 -0.122513073304042 V346 -G354 -0.125823417828335 S359 -S384 -0.127717365390711 C349 -G354 -0.12897298615755 C349 -F355 -0.135673077066567 I342 -A351 -0.135743970293363 A372 -L381 -0.143907910321759 A344 -F350 -0.145137346417799 A375 -L381 -0.146674107035238 G339 -F345 -0.147659343313947 K356 -G390 -0.151189440200732 F345 -L353 -0.152175613355888 D371 -A376 -0.154281094076942 A380 -F391 -0.156572316960115 A347 -K356 -0.159163212261549 V346 -L353 -0.166759802544988 L370 -A375 -0.16735934241922 N387 -V392 -0.167598187210095 A376 -L381 -0.169392345262738 L370 -A376 -0.172252514519571 S357 -A380 -0.178002241810935 G389 -P394 -0.178140740408209 A372 -I379 -0.179286638255288 F345 -A352 -0.180709637692968 A347 -A352 -0.18453413724359 I374 -I382 -0.185650408417724 L381 -G386 -0.186719820114968 I382 -N387 -0.192955563710482 A358 -S384 -0.193798705521808 A344 -A351 -0.195521063244826 A358 -A380 -0.197357508191114 F343 -F350 -0.199098938201676 A358 -L381 -0.202474106479865 S359 -A376 -0.213987933511022 A347 -L353 -0.21518579690855 P341 -I348 -0.225141777612284 K356 -L381 -0.228096303996524 R373 -A380 -0.238697709377246 N383 -V392 -0.252569965936775 I382 -F391 -0.260167135174101 A375 -A380 -0.263878559390132 I374 -I379 -0.278512101976339 I379 -S384 -0.281634748537106 P341 -V346 -0.282338610100476 V378 -S384 -0.2853840163836 S384 -F391 -0.28678721122159 I374 -L381 -0.293377708880404 V346 -A352 -0.294487175783167 I374 -A380 -0.314885957716371 N383 -G389 -0.319516985611219 A376 -I382 -0.321250571045109 A344 -C349 -0.324215232821439 S359 -V378 -0.329503351848481 V385 -F391 -0.331404911042997 A372 -V378 -0.341697887761149 V346 -A351 -0.367335474803546 I342 -I348 -0.377079446493184 A372 -A377 -0.40919080047657 F345 -F350 -0.436739516845972 L388 -P394 -0.445794690154975 I342 -A347 -0.466437633569513 A377 -I382 -0.478115064089328 S384 -G389 -0.524871212082693 F343 -C349 -0.812336958662661