[Fri Aug 26 16:38:30 2016] >Input file: TMQ3YBM2M1D.pdb >TM segments: 74-90_ 96-111_ 130-148 MAIDEN score = -16.7986 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A109 -L131 0.666796645075726 G110 -T132 0.442356842499106 V83 -G88 0.436385041242234 C84 -F136 0.351184005982955 C84 -V144 0.306795062445349 C84 -V106 0.295785550871634 G88 -S96 0.29566887585097 C84 -P89 0.292997689647302 G135 -A142 0.288206370670677 V83 -C146 0.284331036140406 G103 -G135 0.282425621384043 V76 -M140 0.272974272599759 G82 -N148 0.250999987265335 V143 -N148 0.244121909680986 L74 -C79 0.242488186022927 V83 -V147 0.235876036687572 G97 -S104 0.221240709611191 C84 -C146 0.216030819970721 V80 -G88 0.214152640749869 L131 -T138 0.213490045051984 C84 -I107 0.200419057633724 C79 -L85 0.188452822364401 V83 -V143 0.175418684304239 V76 -C84 0.173722140847492 V76 -V83 0.172260212743655 S86 -V147 0.171668853729524 A102 -A109 0.165671697227745 G88 -C146 0.158718849016236 S78 -M140 0.155592768504924 L81 -G110 0.146353878109623 V80 -F136 0.144390563752164 S86 -N148 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0.0521305306350879 A137 -L145 0.0520111567322885 G88 -I107 0.0491057603821026 G110 -L133 0.0481615398418125 V106 -A134 0.0467477716463578 C84 -A141 0.0462737454096507 G110 -L130 0.0461664890275193 V80 -A142 0.0452435739500991 L87 -A142 0.0447339498508901 A111 -L130 0.0439673165001886 V106 -A137 0.0427020767901904 P89 -A99 0.0423904947834028 C84 -A139 0.042350498075751 L87 -A99 0.0419479113892018 V80 -A109 0.0392001545025424 V83 -G110 0.0389020534761644 S86 -V143 0.0387692601444023 G103 -L131 0.0376158343255013 A102 -A134 0.0367886554536763 A102 -L131 0.0350873133010281 G82 -L145 0.0349222104150844 G88 -S104 0.0348963843289862 P89 -S104 0.0346433118627125 W101 -V106 0.0337666420349241 A108 -L130 0.0332127169570727 V83 -F136 0.0323458370312604 L85 -V143 0.0318811603146969 T132 -A141 0.031636625279144 A108 -G135 0.0303015515813501 L74 -G82 0.0301857280468241 L87 -F100 0.026730995616985 G82 -A141 0.0266217195234137 V83 -G103 0.0250339709818657 C79 -F136 0.0241613765911588 V106 -T138 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