[Mon Aug 29 17:29:29 2016] >Input file: TMQ86YK3M2G.pdb >TM segments: 40-58 MAIDEN score = -1.3915 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I43 -P49 0.461504359238688 T45 -T50 0.258494658884981 I43 -P48 0.245994118049242 T50 -E55 0.233874060391294 F51 -S58 0.127311229616447 R52 -W57 0.121648662987482 P49 -P54 0.119200245113342 I40 -T50 0.0814983761382599 F41 -N46 0.0698057123737605 I40 -P48 0.0655461876848658 M42 -F51 0.0425839784600266 K53 -S58 0.0249108030457783 F41 -P48 0.0233973108080345 N46 -F51 0.0221130681461368 M42 -P49 0.0210764126063516 M42 -P47 0.0194419536243818 F41 -P49 0.00923256401202432 P49 -W57 -0.0169828296508189 T50 -W57 -0.0335804776042024 I40 -P47 -0.0384590881082487 I43 -F51 -0.0387347821093402 R52 -S58 -0.0738669960281959 P44 -T50 -0.0863399706228858 I40 -P49 -0.0959156787284403 T50 -L56 -0.106117195883502 F41 -T50 -0.124384889075011 P48 -P54 -0.133298510884917 F41 -P47 -0.155546257866745 I40 -T45 -0.161192711209937 F51 -L56 -0.187772126309521 M42 -P48 -0.200907411415711 I40 -N46 -0.223437072895054 P48 -K53 -0.23012051984646 I43 -T50 -0.234333819524699 P44 -P49 -0.250772056292631 P49 -E55 -0.274645935549662 M42 -T50 -0.325173054734012 F51 -W57 -0.347595880195581