[Mon Aug 29 17:31:18 2016] >Input file: TMQ87984M1G.pdb >TM segments: 83-131 MAIDEN score = 12.7322 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R89 -P105 10 F88 -P105 6.80927958089922 V91 -W107 0.922573110498074 Q90 -W107 0.902853791109105 F88 -V104 0.709630398386903 R89 -V104 0.698357807320514 W107 -Q113 0.686263424564377 V91 -N106 0.634922005787854 F88 -W107 0.573857787311664 G85 -V104 0.449091486478841 T94 -E101 0.444908040766526 T95 -E101 0.441857492498937 R89 -L103 0.420132309608992 V91 -V104 0.417067046727468 C86 -V104 0.393947514088991 C92 -E101 0.389729364117249 C86 -P105 0.377024585306161 R117 -L122 0.36595807505188 N108 -Q113 0.336633102785624 N109 -R117 0.331045334459927 Q90 -N106 0.322849466695001 P105 -W112 0.316251301133391 A87 -N109 0.311354385076239 T94 -P105 0.296125237126041 T94 -P99 0.294347822174617 A87 -L103 0.292734025077442 C92 -T102 0.277997169738173 M110 -Q118 0.270719198423386 C86 -E101 0.269509109422017 R117 -E123 0.256478103954786 E114 -V119 0.252798816324284 C86 -T102 0.241194015565878 R89 -N109 0.23964744556426 Q90 -N109 0.230642799223267 Q113 -F121 0.230170498159109 E101 -N106 0.229854147546188 C92 -N109 0.223072424024394 H93 -T102 0.218582120930447 W107 -W112 0.20827166378217 N108 -R117 0.206457577363668 G85 -N109 0.204025561915032 R117 -N125 0.203209042034159 T94 -N100 0.188693289780678 L103 -N109 0.180465991140677 C92 -L103 0.164719219864557 P105 -Q113 0.159527684897659 M110 -R117 0.159445176508482 W112 -D120 0.158641802759381 S83 -F88 0.157650458231308 H93 -V104 0.155277596976286 R89 -E114 0.151341384207837 P97 -L103 0.148596475320938 R89 -E101 0.140272962674619 N108 -E116 0.137257716526662 H93 -P105 0.13512826075815 Q90 -T102 0.133078879473215 V91 -V96 0.13139903704004 E116 -N125 0.129652113342774 E123 -E131 0.127224929754499 W84 -N106 0.122203247845919 W84 -P105 0.116171722964037 W84 -L103 0.115052523637885 R89 -T111 0.108656890500962 Q118 -N125 0.106207866505787 T111 -V119 0.105295210328125 F88 -Q113 0.105128138159537 T94 -N106 0.104585416677739 N106 -Q113 0.104019449679432 H93 -W107 0.0969284833038669 V96 -L103 0.0951496582922897 E116 -F121 0.0943800862666295 E114 -E123 0.0935392677315938 M110 -E116 0.0926613276214745 E123 -L129 0.0846813220467235 A87 -T102 0.0830186861534008 N109 -W115 0.0825445579934536 R89 -T102 0.0818242280685011 G85 -E101 0.0770669792176402 C86 -N109 0.072935942680985 C86 -T111 0.0699484277085469 R89 -W112 0.0659890439501325 D120 -Q128 0.0620027142970494 E116 -A124 0.061800597917915 F88 -L103 0.0611370587449285 G85 -M110 0.0609874291835197 L122 -L130 0.0577731715318457 A87 -M110 0.0574027481383332 H93 -E101 0.0540092233959293 P97 -T102 0.0523554229539656 E116 -L122 0.0510129432487201 V91 -L103 0.0444360806179347 A87 -C92 0.0443435354250705 G85 -T102 0.0420263925440314 A87 -N106 0.0407745707243992 C92 -M110 0.0369175859543462 C86 -W112 0.0316336564731836 V91 -N108 0.0301948787327806 V91 -Q113 0.0297776775557965 G85 -V91 0.0288153172963694 G85 -T111 0.0255308983477507 N125 -L130 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-0.163872669614936 W84 -R89 -0.165900541219085 N109 -Q118 -0.170066061353372 T95 -N100 -0.171585689966331 W107 -R117 -0.173786405929624 V104 -W112 -0.175476531442289 H93 -N100 -0.188012553901344 L122 -L129 -0.189412072215817 W115 -E123 -0.189654917229248 R89 -M110 -0.191969986166737 E123 -L130 -0.192412083827297 C86 -V91 -0.192499631172101 V91 -E101 -0.192712174762367 D120 -T127 -0.196949806486999 C92 -Q113 -0.197169502847799 V119 -I126 -0.200194348966194 E116 -E123 -0.20474802941879 F88 -E114 -0.207011043906411 W107 -W115 -0.207089300027177 T111 -Q118 -0.214112337617984 R117 -A124 -0.218223923330639 V96 -T102 -0.219211018225988 G85 -P105 -0.223734125978897 Q118 -A124 -0.225974166435896 R89 -N108 -0.230601944989319 A87 -P105 -0.233505774807953 N108 -E114 -0.240487649934513 W84 -N109 -0.240613651710799 A87 -V104 -0.244082955605103 C86 -M110 -0.247291359560511 N125 -E131 -0.253297692962872 C92 -P97 -0.256687434125626 N106 -W115 -0.25782808951004 S83 -L103 -0.25807079390565 V91 -M110 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