[Fri Aug 26 18:33:32 2016] >Input file: TMQ8JZM4S6D.pdb >TM segments: B90-104 MAIDEN score = -1.3252 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F93B-C98B 0.35813256765617 A99B-H104B 0.211219842000259 V94B-S100B 0.209385132013678 D96B-P102B 0.145807180139185 P97B-H104B 0.125979966030987 V94B-N101B 0.0709062297830472 A95B-N101B 0.0518834256849012 V94B-P102B 0.0497935807809 A95B-S100B 0.00108074743689723 F93B-S100B -0.00530365000969013 V94B-A99B -0.0157114665079865 A95B-C103B -0.0309982085477307 V94B-C103B -0.0317123935327697 C91B-D96B -0.0412594923477454 P97B-C103B -0.0461950709418285 Q92B-P97B -0.0516904378639075 D96B-H104B -0.0647316260499746 D96B-N101B -0.0930918904104504 Y90B-A95B -0.110525610271148 A95B-P102B -0.136310574701702 C91B-P97B -0.215407936091915 C98B-C103B -0.347234223152164 D96B-C103B -0.370882825743886 C98B-H104B -0.406425096000316 P97B-P102B -0.581895017281449