[Mon Aug 29 18:04:36 2016] >Input file: TMQ8WW62M1G.pdb >TM segments: 113-143_ 173-190 MAIDEN score = 22.3081 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q117 -N122 10 V138 -N181 2.32709317424183 L134 -R178 1.51020434781043 F139 -F182 1.06981318237062 F115 -H124 1.05388065742571 F139 -Y180 1.00713090662201 V132 -W177 0.99822943964053 L134 -W177 0.825371367709797 F136 -Y180 0.675683901005414 F139 -A183 0.675567048604421 V138 -F182 0.628146633952887 T113 -F127 0.625426185972374 L118 -Q123 0.607410335473159 A183 -M188 0.601588353267041 F115 -Q123 0.586078608253519 T113 -H124 0.585110729856636 F115 -N122 0.572505636391538 T113 -S129 0.572400728664501 V138 -A183 0.571499983839778 N135 -Y180 0.533309982352918 Q131 -F174 0.499112754269804 G114 -N122 0.472128891320692 V132 -R178 0.424659149129261 V132 -M176 0.404101381386518 Q131 -Y179 0.399848343107575 E141 -M185 0.393733715709547 G114 -S129 0.370810508752391 N135 -W177 0.370147260125484 G137 -R178 0.364148559214073 Q131 -W177 0.35795928956985 L134 -M176 0.347880076055435 T113 -H126 0.339510908135638 Q117 -H124 0.337970003910491 Y133 -M176 0.334371833885745 V138 -D190 0.324263328215378 G137 -N181 0.323969420429887 Y116 -Q131 0.321881237081749 Y116 -S121 0.31765711611269 L134 -Y180 0.286954832859972 L134 -Y179 0.278419103426736 G142 -N181 0.275102073134649 G142 -Y180 0.270765553813847 L118 -H175 0.258447663543872 Y140 -R186 0.253199126461962 G137 -W177 0.244400234949348 Q123 -Y133 0.244174840278706 V132 -I173 0.227211096092058 S121 -S129 0.218373528718653 Y140 -M188 0.211398590380838 F182 -M188 0.205245104746832 T113 -Q123 0.20331552791238 Q117 -G128 0.20026811420284 Y116 -F174 0.199468682018529 G137 -A183 0.196491313788028 G137 -Y179 0.186786777195335 Y116 -M176 0.184208736318005 L118 -N125 0.181534938379237 Y116 -S129 0.18129576701765 F174 -Y179 0.180818512107352 G137 -Y180 0.17372475512394 Y116 -H126 0.170540677233299 G114 -N125 0.160112723779788 G114 -C119 0.160031656994722 G137 -M188 0.156137636858971 N181 -D190 0.154846203833107 F115 -G128 0.152127457074027 G114 -Y133 0.151788102383424 Y116 -H175 0.148859472946247 C119 -Y133 0.146855251336466 Y180 -M185 0.141676714125748 C119 -H124 0.1416290297145 C119 -H175 0.137464662825924 G142 -R184 0.137363266002261 Y140 -Y179 0.128602706624989 Y140 -D190 0.128486059004735 G137 -M176 0.127175281291031 Q117 -Q123 0.126338590695587 I173 -Y179 0.124397166758494 Y140 -Y180 0.124198090152426 Q131 -R178 0.122648896911645 V132 -H175 0.121728609690658 Q117 -H175 0.118377267111437 F139 -R178 0.117482804750099 Q117 -H126 0.116561689907574 F136 -W177 0.114900147893133 L118 -I173 0.114891643395207 G128 -F174 0.114703983559719 G137 -G142 0.112509776937145 P143 -Y179 0.111209032286721 C119 -W177 0.110660383214443 Y133 -N181 0.110158841094306 P143 -R184 0.108494628769719 L118 -Y133 0.103416516825827 Y140 -N181 0.102917797592434 Y140 -K187 0.102104093718442 F127 -V132 0.101106273635257 G142 -M188 0.0993720549650945 Q123 -H175 0.0971926433171326 E141 -R186 0.0944213349874632 T113 -S121 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