[Mon Aug 29 17:13:17 2016] >Input file: TMQ923B6M1G.pdb >TM segments: 43-48_ 125-147 MAIDEN score = 1.9165 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I137 -L142 1.21025082130494 A141 -T146 0.435215062666888 E125 -V130 0.318286781159772 A141 -L147 0.280617657270808 A139 -G145 0.243590243365737 T136 -Q143 0.238061106599962 T136 -T146 0.204368493325743 A133 -S138 0.173074935629789 T136 -L142 0.161692793527364 I137 -G145 0.124061669634135 P126 -V131 0.123235909835146 F134 -Q143 0.120708097292996 I137 -Q143 0.113473895241478 E125 -K132 0.105302710415108 K132 -I137 0.0995034276862246 N135 -A141 0.0870999530614394 A133 -A139 0.0794240336687024 A139 -L147 0.0572287711061974 V130 -N135 0.0465376879747552 S138 -S144 0.0418385661055551 S138 -G145 0.041806104703991 E125 -V131 0.0340841244861401 T136 -S144 0.0298814724238614 S138 -L147 0.0279706352358684 A133 -L142 0.0244941817286088 I137 -S144 0.0208776359526635 F134 -L142 0.0201587395009053 A139 -S144 0.0141160930141915 V131 -T136 0.0122487954053039 W140 -G145 0.00506528896949465 T136 -L147 -0.0112146108571429 F134 -S144 -0.0280354236020925 W140 -L147 -0.0507765215630265 A133 -Q143 -0.0574747840897301 N135 -W140 -0.072008790262803 A133 -A141 -0.076428623539043 W140 -T146 -0.0828179898494907 N135 -Q143 -0.0840671465632628 I137 -L147 -0.0864898454879386 S138 -Q143 -0.0887885338691938 F134 -A141 -0.110510323788801 F134 -A139 -0.120574494633917 T136 -A141 -0.1627056862087 A139 -T146 -0.171525086895334 F134 -W140 -0.186551568853379 S138 -T146 -0.232665249194654 I137 -T146 -0.241866310266153 N135 -L142 -0.247461225705035 L142 -L147 -0.465816379515094