[Fri Aug 26 17:28:09 2016] >Input file: TMQ9N2K0S1D.pdb >TM segments: A435-465 MAIDEN score = -11.9581 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R457A-L462A 0.46034091075318 V452A-R457A 0.41003402985396 L442A-D447A 0.381968584805859 V453A-R458A 0.361063527836993 R458A-L463A 0.298621145959634 A450A-Q455A 0.265499408356134 R457A-A465A 0.232086677656342 Q445A-A450A 0.1933860825267 L460A-A465A 0.179594960122255 D447A-R457A 0.176280949041619 Q437A-L442A 0.173946766910673 A450A-R458A 0.145442049338594 Q455A-L460A 0.127739876526541 D447A-N456A 0.122394162759434 S436A-V441A 0.116766471195066 A450A-L460A 0.110291786443751 A444A-V452A 0.105478007138966 L439A-D447A 0.102284392019521 Q445A-L454A 0.0922546979906924 S436A-A444A 0.079881825789482 Q443A-A451A 0.0733959101455532 I435A-S440A 0.0582056525651264 S436A-Q445A 0.0567815227509061 I435A-Q443A 0.0519860025987251 T438A-V446A 0.0486727131042546 Q437A-A444A 0.0475506155508263 D447A-Q455A 0.047198605463137 S448A-V453A 0.0467342681407805 Q455A-L463A 0.0365935853910404 I435A-Q445A 0.0291796596020841 T438A-S448A 0.0186438849663872 S448A-N456A 0.0170953424118407 V452A-L462A 0.0120840846068533 L449A-G459A 0.000428998447270401 N456A-A465A -0.00131970988068364 Q445A-V453A -0.00134514061026714 Q443A-V452A -0.00673729195937023 Q443A-V453A -0.0135777240670427 A450A-G459A -0.0164898833725831 Q455A-T464A -0.0169368640735588 T438A-D447A -0.0176914473252427 Q437A-V446A -0.023535403236941 A451A-G459A -0.0261200835974384 Q455A-A465A -0.027753968784479 S440A-D447A -0.0349326583392002 V446A-Q455A -0.0422891214117649 R458A-T464A -0.0429389363579933 A444A-V453A -0.0443789052775099 N456A-L462A -0.0462577167347877 L442A-A450A -0.0487326030411399 N456A-D461A -0.051470576016029 V441A-A450A -0.054748823520562 S440A-S448A -0.0562564809129182 N456A-T464A -0.0576942433787204 V446A-L454A -0.0596409628794969 V452A-D461A -0.0792866137575778 Q455A-D461A -0.084634786580764 A444A-L449A -0.0851638772328389 T438A-Q445A -0.091624505831291 S448A-R457A -0.0945255195251329 Q443A-S448A -0.0953695656098297 L442A-A451A -0.0984563462393542 V453A-L462A -0.104647871205286 V446A-N456A -0.106529883582519 S440A-Q445A -0.110416217980715 V453A-D461A -0.111026408906546 L449A-R457A -0.114998893156754 I435A-A444A -0.117549779142215 V452A-G459A -0.122180702378637 D447A-V452A -0.124292363544879 Q443A-A450A -0.126387442066603 A451A-L460A -0.131050608893887 Q437A-Q445A -0.135140697048005 R457A-T464A -0.145438519859487 S448A-Q455A -0.149907561420802 L454A-L463A -0.151963236516877 L454A-L462A -0.15457278908146 T438A-Q443A -0.157521220801932 V453A-G459A -0.159544623677331 V453A-L460A -0.163152861754893 L449A-R458A -0.166247187782634 Q445A-V452A -0.166857215259295 V452A-R458A -0.171926706086107 A450A-R457A -0.176230076325762 S440A-L449A -0.177366410671486 S436A-Q443A -0.178189996107169 L439A-S448A -0.178678568888355 R457A-L463A -0.179733274605745 L449A-N456A -0.191213626823533 A451A-R457A -0.193975764355133 R458A-A465A -0.195645376568027 A444A-A451A -0.196842383923566 T438A-A444A -0.197492910272256 N456A-L463A -0.198002111400612 V441A-V446A -0.198627752941386 L442A-S448A -0.203398888096228 L442A-L449A -0.207790733450898 Q445A-A451A -0.214690974897529 A450A-N456A -0.224558265173714 V452A-L460A -0.22458756257402 L439A-V446A -0.226130343325881 A451A-N456A -0.228986284174346 V441A-L449A -0.232189761407062 A444A-A450A -0.233400193202666 S436A-L442A -0.23621915593716 L454A-L460A -0.238420361432205 Q455A-L462A -0.239742914649052 S448A-L454A -0.241055891591581 A451A-R458A -0.24489173855391 G459A-A465A -0.254638650647495 V441A-S448A -0.262397686647925 D447A-V453A -0.265646302732924 V441A-D447A -0.295740542181375 V446A-A451A -0.300048728888545 L439A-A444A -0.303090374733724 L454A-D461A -0.303548070057364 D447A-L454A -0.304166621152123 V446A-V452A -0.306394284609397 G459A-T464A -0.322863968848072 I435A-L442A -0.33140342582974 V446A-V453A -0.33866278789119 Q437A-Q443A -0.347338646182125 S440A-V446A -0.367162720071871 I435A-V441A -0.369042337612671 L454A-G459A -0.398458063954818 L449A-L454A -0.419320069684531 Q443A-L449A -0.477349978137129 L439A-Q445A -0.499119093825243 L449A-Q455A -0.502313800392088