[Mon Aug 29 17:43:41 2016] >Input file: TMQ9P2V4M1G.pdb >TM segments: 335-347 MAIDEN score = 0.5792 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I341 -T346 0.544953652182833 T339 -I344 0.204401483155556 T339 -T346 0.121224819387589 E338 -L343 0.11517994481295 S337 -L343 0.0858645053195941 S342 -E347 0.084327906425798 V340 -V345 0.0727543866857721 V340 -E347 0.026809908814392 E338 -V345 0.0252456381187492 T339 -V345 0.0172750583287766 S337 -S342 -0.0615061173137939 S337 -I344 -0.0784960619121483 E338 -I344 -0.178130299147251 I341 -E347 -0.196410621494107 V340 -T346 -0.204297728121253