[Mon Aug 29 16:58:24 2016] >Input file: TMQ9Z139S3G.pdb >TM segments: A96-110 MAIDEN score = 0.9208 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q100A-I105A 1.08503264321634 Q100A-F107A 0.807839224423486 E101A-F107A 0.491090606036332 V99A-R108A 0.406132541229387 E101A-T110A 0.34373267274148 V98A-R103A 0.328224951975485 V98A-S106A 0.20515527329477 V99A-F107A 0.201284864163111 Q100A-S106A 0.172252123561688 P97A-R108A 0.157832276189226 R104A-A109A 0.148538721836372 E101A-A109A 0.130513251482122 P97A-A109A 0.123339952443399 E101A-R108A 0.118614358833123 P97A-R103A 0.109916027739807 V98A-I105A 0.0901503545215672 V98A-R104A 0.0762368541756216 A96A-F107A 0.0762002099217423 R103A-R108A 0.02009665995898 V99A-T110A 0.00599660037503202 V98A-T110A -0.00107645255854116 R103A-A109A -0.00158381211798897 P102A-A109A -0.0198502811250969 Q100A-T110A -0.036059890681109 I105A-T110A -0.0492943723745545 R103A-T110A -0.0521708062115341 A96A-P102A -0.064614366491452 P102A-F107A -0.067182369270153 V99A-A109A -0.0796394240427789 P97A-P102A -0.0823915148411265 E101A-S106A -0.118976658457278 P97A-F107A -0.154210085128305 A96A-R103A -0.155949159951662 V99A-R104A -0.162609374495665 V98A-R108A -0.167044393817037 V99A-I105A -0.190238245750716 V98A-A109A -0.21697012992742 V99A-S106A -0.269366200663147 V98A-F107A -0.323541709541602 Q100A-A109A -0.452994132842885 P102A-R108A -0.479884485597363 Q100A-R108A -1.03168681771701