[Fri Aug 26 17:51:46 2016] >Input file: TMV1QKJ0M1D.pdb >TM segments: 136-157_ 160-184 MAIDEN score = -23.6086 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L149 -L173 0.723556258826967 A178 -R183 0.687309347829494 L143 -L181 0.66071448200888 F167 -A172 0.513563803829693 I147 -L181 0.458908346081568 A150 -M177 0.458750819349011 L149 -M177 0.440031836035672 R151 -L156 0.431748078985764 A150 -L173 0.368482423140736 I147 -M177 0.355584558816597 G146 -M177 0.327860672871775 V153 -L173 0.316740643130514 G155 -A170 0.310165853004781 L149 -M174 0.293904070195547 A154 -L160 0.291044610428093 G162 -S171 0.290396121855493 A150 -A178 0.286847959262623 A170 -A178 0.281225577301603 R151 -A170 0.264143916483965 L156 -G162 0.260866920031411 L173 -A178 0.24897482748035 G142 -W182 0.243854608090408 L160 -T165 0.241645604701109 I147 -T152 0.240568310287427 M174 -R183 0.233810294729837 G146 -A180 0.226935413815523 R164 -M174 0.223214215839548 A154 -G161 0.221394511637265 L144 -T152 0.214633478995496 G155 -G162 0.20787069679597 T138 -G184 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