3BPC (resolution: 1.80 Å)

ID Name Organism Chains bound to carbohydrates
1 Fab, antibody fragment (IgG1k), light chain
Light chain subclass: IGKV8 (Kappa)
Mus musculus 1 chain bound to carbohydrates
Chain A:
2 binding sites
2 Fab, antibody fragment (IgG1k), heavy chain
Heavy chain subclass: IGHV7
Mus musculus 1 chain bound to carbohydrates
Chain B:
1 binding site

Chain properties


Carbohydrates


ID Description N° of binding sites Bound to chains Binding affinity
3 3 + 4 + 5-trideoxy-α-D-erythro-oct-3-en-2-ulopyranosonic acid-(2-8)-prop-2-en-1-yl 3-deoxy-α-D-manno-oct-2-ulopyranosidonic acid 2 (1 molecule) A, B -logKd/Ki=4.80, Kd=16uM (PDBbind-CN)

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates