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5YGS
(resolution: 2.69 Å)
Select a model
Model 1
ID
Name
Organism
Chains bound to carbohydrates
1
Human TNRSF25 death domain
P0AEX9
,
Q93038
Homo sapiens
4 chains bound to carbohydrates
Chain A
:
3 binding sites
Chain B
:
3 binding sites
Chain C
:
3 binding sites
Chain D
:
3 binding sites
Chain properties
This chain feature no protein-carbohydrate interface.
Entity 1 (Human TNRSF25 death domain)
A
B
C
D
Carbohydrates
ID
Common name
Description
N° of binding sites
Bound to chains
2
α-maltotriose
α-D-glucopyranose-(1-4)-α-D-glucopyranose-(1-4)-α-D-glucopyranose
12 (4 molecules)
A, B, C, D
Binding sites
Select a binding site
(Entity 2 - molecule 1) -- 5YGS_1_GLC_3 -- GLC1:E -- bound to chain A -- Cluster A1 (mapped)--
(free)
-- 65 atoms and SASA 300 A²
(Entity 2 - molecule 1) -- 5YGS_1_GLC_1 -- GLC2:E -- bound to chain A -- Cluster not attributed--
(free)
-- 65 atoms and SASA 275 A²
(Entity 2 - molecule 1) -- 5YGS_1_GLC_2 -- GLC3:E -- bound to chain A -- Cluster not attributed--
(free)
-- 68 atoms and SASA 420 A²
(Entity 2 - molecule 2) -- 5YGS_1_GLC_6 -- GLC1:F -- bound to chain B -- Cluster A1 (mapped)--
(free)
-- 65 atoms and SASA 320 A²
(Entity 2 - molecule 2) -- 5YGS_1_GLC_5 -- GLC2:F -- bound to chain B -- Cluster not attributed--
(free)
-- 64 atoms and SASA 281 A²
(Entity 2 - molecule 2) -- 5YGS_1_GLC_4 -- GLC3:F -- bound to chain B -- Cluster not attributed--
(free)
-- 74 atoms and SASA 430 A²
(Entity 2 - molecule 3) -- 5YGS_1_GLC_7 -- GLC1:G -- bound to chain C -- Cluster A1 (mapped)--
(free)
-- 64 atoms and SASA 305 A²
(Entity 2 - molecule 3) -- 5YGS_1_GLC_8 -- GLC2:G -- bound to chain C -- Cluster not attributed--
(free)
-- 62 atoms and SASA 284 A²
(Entity 2 - molecule 3) -- 5YGS_1_GLC_9 -- GLC3:G -- bound to chain C -- Cluster not attributed--
(free)
-- 72 atoms and SASA 395 A²
(Entity 2 - molecule 4) -- 5YGS_1_GLC_11 -- GLC1:H -- bound to chain D -- Cluster A1 (mapped)--
(free)
-- 70 atoms and SASA 341 A²
(Entity 2 - molecule 4) -- 5YGS_1_GLC_10 -- GLC2:H -- bound to chain D -- Cluster not attributed--
(free)
-- 66 atoms and SASA 312 A²
(Entity 2 - molecule 4) -- 5YGS_1_GLC_12 -- GLC3:H -- bound to chain D -- Cluster not attributed--
(free)
-- 74 atoms and SASA 421 A²
Related structures
Bound to carbohydrates
5BK2
1FQD
6DKS
6HDB
1NMU
1JVY
4WJV
3PUZ
1T0K
1FQB
4MBP
1A7L
1FQC
7MQ6
1JW5
5IHJ
5DFM
3PUV
3SEX
4KHZ
5T0A
3SEV
1EZ9
1NL5
5C7R
7JHH
2OK2
4KI0
3PGF
7M74
1YTV
3SEU
1IUD
3RLF
4KV3
5T03
4XA2
5BJZ
7JHG
3PUX
6HD8
1N3W
1Y4C
3PUW
1MG1
5E24
1JVX
6HDC
3PUY
3SEY
5WQ6
4WVH
1DMB
5HZ7
4XHS
4TSM
3SES
6SWR
6TZC
7MQ7
3SER
1MPD
3VFJ
4OGM
6WGZ
1ANF
1MDQ
6USM
3HPI
3PV0
5T05
3SET
7JTR
6HD9
6HDA
6OB5
1FQA
3MBP
3SEW
2R6G
3RUM
5CFV
1LAX
3HST
7OMT
7JIJ