Binding site similarity searcher


We have implemented a graph-based score (see About for more details) allowing us to evaluate similarity between two sugar binding sites. The user can upload a protein-carbohydrate complex either using a PDB ID or directly from file and obtain a ranked list of similar sugar binding sites and corresponding structures.

Input protein structure (PDB)

PDB code

AlphaFold Protein Structure Database v4 (UniprotID)

ESM Metagenomic Atlas (MGnifyID)

or upload a PDB file