5NDV (resolution: 3.30 Å)

ID Name Organism Chains bound to carbohydrates
4 Large ribosomal subunit protein uL2A
P0CX45 (RL2A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain D [auth L2]:
6 binding sites
Chain DC [auth l2]:
7 binding sites
5 Large ribosomal subunit protein uL3
P14126 (RL3_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain E [auth L3]:
1 binding site
Chain EC [auth l3]:
1 binding site
6 Large ribosomal subunit protein uL4A
P10664 (RL4A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain F [auth L4]:
7 binding sites
Chain FC [auth l4]:
8 binding sites
7 Large ribosomal subunit protein uL18
P26321 (RL5_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain G [auth L5]:
3 binding sites
Chain GC [auth l5]:
1 binding site
8 Large ribosomal subunit protein eL6A
Q02326 (RL6A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
9 Large ribosomal subunit protein uL30A
P05737 (RL7A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain I [auth L7]:
3 binding sites
10 Large ribosomal subunit protein eL8A
P17076 (RL8A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
11 Large ribosomal subunit protein uL6A
P05738 (RL9A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain K [auth L9]:
2 binding sites
Chain KC [auth l9]:
1 binding site
12 Large ribosomal subunit protein uL16
P41805 (RL10_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain L [auth M0]:
6 binding sites
Chain LC [auth m0]:
2 binding sites
13 Large ribosomal subunit protein uL5B
Q3E757 (RL11B_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
14 Large ribosomal subunit protein eL13A
Q12690 (RL13A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
15 Large ribosomal subunit protein eL14A
P36105 (RL14A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
16 Large ribosomal subunit protein eL15A
P05748 (RL15A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain P [auth M5]:
2 binding sites
Chain PC [auth m5]:
3 binding sites
17 Large ribosomal subunit protein uL13A
P26784 (RL16A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
18 Large ribosomal subunit protein uL22A
P05740 (RL17A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain R [auth M7]:
2 binding sites
Chain RC [auth m7]:
2 binding sites
19 Large ribosomal subunit protein eL18A
P0CX49 (RL18A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain S [auth M8]:
5 binding sites
Chain SC [auth m8]:
6 binding sites
20 Large ribosomal subunit protein eL19A
P0CX82 (RL19A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain T [auth M9]:
1 binding site
Chain TC [auth m9]:
1 binding site
21 Large ribosomal subunit protein eL20A
P0CX23 (RL20A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
22 Large ribosomal subunit protein eL21A
Q02753 (RL21A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain V [auth N1]:
2 binding sites
Chain VC [auth n1]:
2 binding sites
23 Large ribosomal subunit protein eL22A
P05749 (RL22A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain W [auth N2]:
2 binding sites
Chain WC [auth n2]:
2 binding sites
24 Large ribosomal subunit protein uL14A
P0CX41 (RL23A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain X [auth N3]:
1 binding site
Chain XC [auth n3]:
1 binding site
25 Large ribosomal subunit protein eL24A
P04449 (RL24A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
26 Large ribosomal subunit protein uL23
P04456 (RL25_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain Z [auth N5]:
2 binding sites
Chain ZC [auth n5]:
3 binding sites
27 Large ribosomal subunit protein uL24A
P05743 (RL26A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
28 Large ribosomal subunit protein eL27A
P0C2H6 (RL27A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
29 Large ribosomal subunit protein uL15
P02406 (RL28_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain CA [auth N8]:
3 binding sites
Chain CD [auth n8]:
2 binding sites
30 Large ribosomal subunit protein eL29
P05747 (RL29_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain DA [auth N9]:
1 binding site
Chain DD [auth n9]:
1 binding site
31 Large ribosomal subunit protein eL30
P14120 (RL30_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
32 Large ribosomal subunit protein eL31A
P0C2H8 (RL31A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
33 Large ribosomal subunit protein eL32
P38061 (RL32_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain GD [auth o2]:
3 binding sites
34 Large ribosomal subunit protein eL33A
P05744 (RL33A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
35 Large ribosomal subunit protein eL34A
P87262 (RL34A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain IA [auth O4]:
3 binding sites
Chain ID [auth o4]:
3 binding sites
36 Large ribosomal subunit protein uL29A
P0CX84 (RL35A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
37 Large ribosomal subunit protein eL36A
P05745 (RL36A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain KA [auth O6]:
1 binding site
38 Large ribosomal subunit protein eL37A
P49166 (RL37A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain LA [auth O7]:
4 binding sites
Chain LD [auth o7]:
2 binding sites
39 Large ribosomal subunit protein eL38
P49167 (RL38_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain MA [auth O8]:
2 binding sites
Chain MD [auth o8]:
1 binding site
40 Large ribosomal subunit protein eL39
P04650 (RL39_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain NA [auth O9]:
1 binding site
Chain ND [auth o9]:
2 binding sites
41 Ubiquitin-ribosomal protein eL40A fusion protein
P0CH08 (RL40A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain OA [auth Q0]:
3 binding sites
42 Large ribosomal subunit protein eL41B
P0CX87 (RL41B_YEAST)
Saccharomyces cerevisiae 0 chain bound to carbohydrates
43 Large ribosomal subunit protein eL42A
P0CX27 (RL44A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain QA [auth Q2]:
1 binding site
44 Large ribosomal subunit protein eL43A
P0CX25 (RL43A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain RA [auth Q3]:
1 binding site
46 Small ribosomal subunit protein uS2A
P32905 (RSSA1_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
47 Small ribosomal subunit protein eS1A
P33442 (RS3A1_YEAST)
Saccharomyces cerevisiae (strain RM11-1a) 2 chains bound to carbohydrates
Chain UA [auth S1]:
1 binding site
Chain UD [auth s1]:
1 binding site
48 Small ribosomal subunit protein uS5
P25443 (RS2_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
49 Small ribosomal subunit protein uS3
P05750 (RS3_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
50 Small ribosomal subunit protein eS4A
P0CX35 (RS4A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain XD [auth s4]:
1 binding site
51 Small ribosomal subunit protein uS7
P26783 (RS5_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
52 Small ribosomal subunit protein eS6A
P0CX37 (RS6A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
53 Small ribosomal subunit protein eS7A
P26786 (RS7A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
54 Small ribosomal subunit protein eS8A
P0CX39 (RS8A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
55 Small ribosomal subunit protein uS4A
O13516 (RS9A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
56 Small ribosomal subunit protein eS10A
Q08745 (RS10A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
57 Small ribosomal subunit protein uS17A
P0CX47 (RS11A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain EE [auth c1]:
2 binding sites
58 Small ribosomal subunit protein eS12
P48589 (RS12_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
59 Small ribosomal subunit protein uS15
P05756 (RS13_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
60 Small ribosomal subunit protein uS11B
P39516 (RS14B_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
61 Small ribosomal subunit protein uS19
Q01855 (RS15_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
62 Small ribosomal subunit protein uS9A
P0CX51 (RS16A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
63 Small ribosomal subunit protein eS17A
P02407 (RS17A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
64 Small ribosomal subunit protein uS13A
P0CX55 (RS18A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
65 Small ribosomal subunit protein eS19A
P07280 (RS19A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
66 Small ribosomal subunit protein uS10
P38701 (RS20_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
67 Small ribosomal subunit protein eS21A
P0C0V8 (RS21A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
68 Small ribosomal subunit protein uS8A
P0C0W1 (RS22A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
69 Small ribosomal subunit protein uS12A
P0CX29 (RS23A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 2 chains bound to carbohydrates
Chain QB [auth D3]:
3 binding sites
Chain QE [auth d3]:
3 binding sites
70 Small ribosomal subunit protein eS24A
P0CX31 (RS24A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain RE [auth d4]:
1 binding site
71 Small ribosomal subunit protein eS25A
Q3E792 (RS25A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
72 Small ribosomal subunit protein eS26B
P39939 (RS26B_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
73 Small ribosomal subunit protein eS27A
P35997 (RS27A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
74 Small ribosomal subunit protein eS28A
Q3E7X9 (RS28A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
75 Small ribosomal subunit protein uS14A
P41057 (RS29A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
76 Small ribosomal subunit protein eS30A
P0CX33 (RS30A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 chain bound to carbohydrates
Chain XB [auth E0]:
1 binding site
77 Small ribosomal subunit protein RACK1
P38011 (GBLP_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
78 Suppressor protein STM1
P39015 (STM1_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates
79 Small ribosomal subunit protein eS6A
P0CX37 (RS6A_YEAST)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Description N° of binding sites Bound to chains
80 paromomycin 115 (63 molecules) CA, CD, D, DA, DC, DD, E, EC, EE, F, FC, G, GC, GD, I, IA, ID, K, KA, KC, L, LA, LC, LD, MA, MD, NA, ND, OA, P, PC, QA, QB, QE, R, RA, RC, RE, S, SC, T, TC, UA, UD, V, VC, W, WC, X, XB, XC, XD, Z, ZC
[auth D3,E0,L2,L3,L4,L5,L7,L9,M0,M5,M7,M8,M9,N1,N2,N3,N5,N8,N9,O4,O6,O7,O8,O9,Q0,Q2,Q3,S1,c1,d3,d4,l2,l3,l4,l5,l9,m0,m5,m7,m8,m9,n1,n2,n3,n5,n8,n9,o2,o4,o7,o8,o9,s1,s4]

Binding sites


Related structures