5SZS (resolution: 3.40 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
Q6Q1S2 (SPIKE_CVHNL)
Human coronavirus NL63 3 chains bound to carbohydrates
Chain A:
33 glycosylation head interfaces
40 glycosylation body interfaces
28 N-glycosylations
Chain B:
34 glycosylation head interfaces
40 glycosylation body interfaces
28 N-glycosylations
Chain C:
34 glycosylation head interfaces
40 glycosylation body interfaces
28 N-glycosylations

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
2 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 15 (3 molecules) A, B, C
3 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 66 (33 molecules) A, B, C
4 α-D-mannopyranose-(1-3)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 12 (6 molecules) A, B, C
5 α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 9 (3 molecules) A, B, C
6 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 24 (3 molecules) A, B, C
7 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 18 (9 molecules) A, B, C
8 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 21 (6 molecules) A, B, C
9 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 20 (20 molecules) A, B, C

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates