7DVQ (resolution: 2.89 Å)

ID Name Organism Chains bound to carbohydrates
1 Pre-mRNA-processing-splicing factor 8
Q6P2Q9 (PRP8_HUMAN)
Homo sapiens 1 chain bound to carbohydrates
Chain A:
1 binding site
3 116 kDa U5 small nuclear ribonucleoprotein component
Q15029 (U5S1_HUMAN)
Homo sapiens 1 chain bound to carbohydrates
Chain C:
1 binding site
4 U5 small nuclear ribonucleoprotein 200 kDa helicase
O75643 (U520_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
5 U5 small nuclear ribonucleoprotein 40 kDa protein
Q96DI7 (SNR40_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
6 Small nuclear ribonucleoprotein Sm D3
P62318 (SMD3_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
7 Small nuclear ribonucleoprotein-associated proteins B and B'
P14678 (RSMB_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
8 Small nuclear ribonucleoprotein Sm D1
P62314 (SMD1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
9 Small nuclear ribonucleoprotein Sm D2
P62316 (SMD2_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
10 Small nuclear ribonucleoprotein F
P62306 (RUXF_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
11 Small nuclear ribonucleoprotein E
P62304 (RUXE_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
12 Small nuclear ribonucleoprotein G
P62308 (RUXG_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
16 Sodium channel modifier 1
Q9BWG6 (SCNM1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
17 Splicing factor 3B subunit 1
O75533 (SF3B1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
18 Splicing factor 3B subunit 2
Q13435 (SF3B2_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
19 Splicing factor 3B subunit 3
Q15393 (SF3B3_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
20 Splicing factor 3B subunit 4
Q15427 (SF3B4_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
21 Splicing factor 3B subunit 6
Q9Y3B4 (SF3B6_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
22 PHD finger-like domain-containing protein 5A
Q7RTV0 (PHF5A_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
23 Splicing factor 3B subunit 5
Q9BWJ5 (SF3B5_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
24 Cell division cycle 5-like protein
Q99459 (CDC5L_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
25 Crooked neck-like protein 1
Q9BZJ0 (CRNL1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
26 Spliceosome-associated protein CWC15 homolog
Q9P013 (CWC15_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
27 SNW domain-containing protein 1
Q13573 (SNW1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
28 Pleiotropic regulator 1
O43660 (PLRG1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
29 Smad nuclear-interacting protein 1
Q8TAD8 (SNIP1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
30 RNA-binding motif protein, X-linked 2
Q9Y388 (RBMX2_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
31 BUD13 homolog
Q9BRD0 (BUD13_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
32 RING-type E3 ubiquitin-protein ligase PPIL2
Q13356 (PPIL2_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
33 Spliceosome-associated protein CWC27 homolog
Q6UX04 (CWC27_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
34 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
O60231 (DHX16_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
35 G-patch domain and KOW motifs-containing protein
Q92917 (GPKOW_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
36 E3 ubiquitin-protein ligase RNF113A
O15541 (R113A_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
37 Serine/arginine repetitive matrix protein 2
Q9UQ35 (SRRM2_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
38 Pre-mRNA-splicing factor CWC22 homolog
Q9HCG8 (CWC22_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
39 Serine/arginine repetitive matrix protein 1
Q8IYB3 (SRRM1_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
40 Cysteine-rich PDZ-binding protein
Q9P021 (CRIPT_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
41 RNA-binding protein 48
Q5RL73 (RBM48_HUMAN)
Homo sapiens 1 chain bound to carbohydrates
Chain VA [auth I]:
1 binding site
42 Armadillo repeat-containing protein 7
Q9H6L4 (ARMC7_HUMAN)
Homo sapiens 1 chain bound to carbohydrates
Chain WA [auth K]:
1 binding site

Chain properties


Carbohydrates


ID Description N° of binding sites Bound to chains
13,47 u6atac snRNA + 5'-O-[(S)-hydroxy{[(r)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine 1 (1 molecule) VA, WA
[auth I,K]
44 guanosine-5'-triphosphate 1 (1 molecule) A, C

Binding sites


Related structures