7SHY (resolution: 3.00 Å)

ID Name Organism Chains bound to carbohydrates
1 Omalizumab VH
Heavy chain subclass: IGHV3
Homo sapiens 0 chain bound to carbohydrates
2 Omalizumab VL
Light chain subclass: IGKV1 (Kappa)
Homo sapiens 3 chains bound to carbohydrates
Chain E [auth L]:
1 glycosylation head interface
Chain F [auth D]:
1 glycosylation head interface
Chain K [auth F]:
1 binding site
3 Immunoglobulin heavy constant epsilon
P01854 (IGHE_HUMAN)
Homo sapiens 4 chains bound to carbohydrates
Chain G [auth A]:
2 glycosylation head interfaces
6 glycosylation body interfaces
2 N-glycosylations
Chain H [auth G]:
1 glycosylation head interface
5 glycosylation body interfaces
1 N-glycosylation
Chain I [auth H]:
1 binding site
3 glycosylation head interfaces
3 glycosylation body interfaces
1 N-glycosylation
1 O-glycosylation
Chain L [auth B]:
1 binding site
1 glycosylation head interface
6 glycosylation body interfaces
1 N-glycosylation

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
4 α-D-mannopyranose-(1-3)-α-D-mannopyranose-(2-3)-[α-L-fucopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (1 molecule) G
[auth A]
5 β-D-mannopyranose-(1-4)-α-D-mannopyranose-(1-6)-[α-D-mannopyranose-(1-3)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (1 molecule) H
[auth G]
6 α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (1 molecule) I
[auth H]
7 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]α-D-mannopyranose-(1-6)-[α-D-mannopyranose-(1-3)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 7 (1 molecule) G, L
[auth A,B]
9 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 3 (3 molecules) E, F, G, I, K, L
[auth A,B,D,F,H,L]
10 α-D-mannopyranose 1 (1 molecule) I
[auth H]

Binding sites


Related structures