7T4R (resolution: 3.30 Å)

ID Name Organism Chains bound to carbohydrates
1 Thrombomodulin
P07204 (TRBM_HUMAN)
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Homo sapiens 0 chain bound to carbohydrates
2 Envelope glycoprotein H
Q6SW67 (GH_HCMVM)
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Human betaherpesvirus 5 2 chains bound to carbohydrates
Chain B:
1 binding site
4 glycosylation head interfaces
4 N-glycosylations
Chain K:
2 binding sites
3 glycosylation head interfaces
3 N-glycosylations
3 Envelope glycoprotein L
F5HCH8 (GL_HCMVM)
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Human betaherpesvirus 5 2 chains bound to carbohydrates
Chain C:
1 binding site
2 glycosylation head interfaces
1 N-glycosylation
Chain L:
2 binding sites
4 Envelope protein UL128
V9LLX6 (UL128_HCMVM)
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Human betaherpesvirus 5 1 chain bound to carbohydrates
Chain M:
1 glycosylation head interface
5 Envelope glycoprotein UL130
F5HCP3 (UL130_HCMVM)
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Human betaherpesvirus 5 2 chains bound to carbohydrates
Chain E:
1 glycosylation head interface
1 N-glycosylation
Chain N:
1 glycosylation head interface
1 N-glycosylation
6 Protein UL131A
F5HET4 (U131A_HCMVM)
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Human betaherpesvirus 5 2 chains bound to carbohydrates
Chain F:
1 glycosylation head interface
Chain O:
2 glycosylation head interfaces
1 N-glycosylation
7 Fab 13H11 heavy chain
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Heavy chain subclass: IGHV1
Homo sapiens 0 chain bound to carbohydrates
8 Fab 13H11 light chain
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Light chain subclass: IGKV1 (Kappa)
Homo sapiens 0 chain bound to carbohydrates
9 Fab MSL-109 light chain
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Light chain subclass: IGKV2 (Kappa)
Homo sapiens 0 chain bound to carbohydrates
10 Fab MSL-109 heavy chain
Unilectin fold: a/b mixed / C-type lectin-like
Unilectin class: C-type lectin
Unilectin family: thrombomodulin
Heavy chain subclass: IGHV3
Homo sapiens 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
11 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 14 (14 molecules) B, C, E, F, K, L, M, N, O

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates