6V80 (resolution: 3.53 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d
P15813 (CD1D_HUMAN)
Homo sapiens 2 chains bound to carbohydrates
Chain A:
1 binding site
1 glycosylation head interface
1 glycosylation body interface
1 N-glycosylation
Chain F:
1 binding site
3 glycosylation head interfaces
1 glycosylation body interface
3 N-glycosylations
2 Beta-2-microglobulin
P61769 (B2MG_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
3 T cell receptor alpha variable 10, nkt tcr alpha chain fusion
A0A0B4J240, K7N5M3
Homo sapiens 2 chains bound to carbohydrates
Chain C:
1 binding site
Chain H:
1 binding site
4 Human nkt tcr beta chain
K7N5M4 (K7N5M4_HUMAN)
Homo sapiens 0 chain bound to carbohydrates
5 Nanobody VHH ID12
Heavy chain subclass: IGHV1
Lama glama 2 chains bound to carbohydrates
Chain E:
1 binding site
Chain J:
1 binding site

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
6 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (2 molecules) A, F
7 N-{(1S + 2r + 3S)-1-[(α-D-galactopyranosyloxy)methyl]-2 + 3-dihydroxyheptadecyl}hexacosanamide 2 (2 molecules) A, C, E, F, H, J
8 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 2 (2 molecules) F

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates