6CDI (resolution: 3.60 Å)

ID Name Organism Chains bound to carbohydrates
1 Envelope glycoprotein gp160
Q2N0S7 (Q2N0S7_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain A [auth c]:
2 glycosylation head interfaces
3 glycosylation body interfaces
2 N-glycosylations
Chain I [auth A]:
3 glycosylation head interfaces
3 glycosylation body interfaces
2 N-glycosylations
Chain Q [auth D]:
3 glycosylation head interfaces
3 glycosylation body interfaces
2 N-glycosylations
2 Envelope glycoprotein gp160
Q2N0S5 (Q2N0S5_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain B [auth d]:
2 binding sites
18 glycosylation head interfaces
21 glycosylation body interfaces
16 N-glycosylations
4 unassigned-glycosylations
Chain J [auth 2]:
2 binding sites
18 glycosylation head interfaces
21 glycosylation body interfaces
16 N-glycosylations
4 unassigned-glycosylations
Chain R [auth C]:
2 binding sites
18 glycosylation head interfaces
21 glycosylation body interfaces
16 N-glycosylations
4 unassigned-glycosylations
3 PGT122 Light Chain
Light chain subclass: unknown (unknown)
Homo sapiens 3 chains bound to carbohydrates
Chain C [auth n]:
2 glycosylation head interfaces
6 glycosylation body interfaces
Chain K [auth 6]:
2 glycosylation head interfaces
6 glycosylation body interfaces
Chain S [auth N]:
2 glycosylation head interfaces
6 glycosylation body interfaces
4 PGT122 Heavy Chain
Heavy chain subclass: unknown
Homo sapiens 3 chains bound to carbohydrates
Chain D [auth m]:
2 glycosylation head interfaces
9 glycosylation body interfaces
Chain L [auth 5]:
2 glycosylation head interfaces
9 glycosylation body interfaces
Chain T [auth M]:
2 glycosylation head interfaces
9 glycosylation body interfaces
5 VRC03 light chain
Light chain subclass: IGKV3 (Kappa)
Homo sapiens 3 chains bound to carbohydrates
Chain E [auth r]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain M [auth 7]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain U [auth R]:
1 glycosylation head interface
3 glycosylation body interfaces
6 VRC03 Heavy Chain
Heavy chain subclass: unknown
Homo sapiens 3 chains bound to carbohydrates
Chain F [auth q]:
1 glycosylation head interface
5 glycosylation body interfaces
Chain N [auth 8]:
1 glycosylation head interface
5 glycosylation body interfaces
Chain V [auth Q]:
1 glycosylation head interface
6 glycosylation body interfaces
7 vFP16.02 Heavy Chain
Heavy chain subclass: IGHV1
Homo sapiens 3 chains bound to carbohydrates
Chain G [auth h]:
1 glycosylation head interface
4 glycosylation body interfaces
Chain O [auth 3]:
1 glycosylation head interface
4 glycosylation body interfaces
Chain W [auth H]:
1 glycosylation head interface
4 glycosylation body interfaces
8 vFP16.02 Light Chain
Light chain subclass: IGKV1 (Kappa)
Homo sapiens 3 chains bound to carbohydrates
Chain H [auth l]:
1 binding site
Chain P [auth 4]:
1 binding site
Chain X [auth L]:
1 binding site

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
9 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 24 (9 molecules) A, B, G, I, J, O, Q, R, W
[auth 2,3,A,C,D,H,c,d,h]
10 α-D-mannopyranose-(1-3)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 36 (9 molecules) A, B, C, D, E, F, G, I, J, K, L, M, N, O, Q, R, S, T, U, V, W
[auth 2,3,5,6,7,8,A,C,D,H,M,N,Q,R,c,d,h,m,n,q,r]
11 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 30 (15 molecules) B, C, H, J, K, P, R, S, X
[auth 2,4,6,C,L,N,d,l,n]
12 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 21 (6 molecules) B, C, J, K, R, S
[auth 2,6,C,N,d,n]
13 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (3 molecules) B, J, R
[auth 2,C,d]
14 α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 9 (3 molecules) B, F, J, N, R, V
[auth 2,8,C,Q,d,q]
15 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 18 (3 molecules) B, F, J, N, R, V
[auth 2,8,C,Q,d,q]
16 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 24 (3 molecules) B, C, D, J, K, L, R, S, T
[auth 2,5,6,C,M,N,d,m,n]
17 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 5 (5 molecules) B, I, J, Q, R
[auth 2,A,C,D,d]

Binding sites


Related structures