6DCQ (resolution: 3.10 Å)

ID Name Organism Chains bound to carbohydrates
1 Envelope glycoprotein gp160
A0A2H4K974 (A0A2H4K974_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain A:
16 glycosylation head interfaces
13 glycosylation body interfaces
14 N-glycosylations
2 unassigned-glycosylations
Chain C:
17 glycosylation head interfaces
13 glycosylation body interfaces
15 N-glycosylations
Chain E:
2 binding sites
16 glycosylation head interfaces
14 glycosylation body interfaces
14 N-glycosylations
1 unassigned-glycosylation
2 Envelope glycoprotein gp160
A0A2H4K974 (A0A2H4K974_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain B:
5 glycosylation head interfaces
5 glycosylation body interfaces
4 N-glycosylations
Chain D:
5 glycosylation head interfaces
4 glycosylation body interfaces
4 N-glycosylations
Chain F:
5 glycosylation head interfaces
7 glycosylation body interfaces
4 N-glycosylations
3 IgG H chain
S6B291 (S6B291_HUMAN)
Heavy chain subclass: IGHV3
Homo sapiens 2 chains bound to carbohydrates
Chain G [auth H]:
1 glycosylation head interface
16 glycosylation body interfaces
Chain I [auth M]:
2 glycosylation head interfaces
15 glycosylation body interfaces
4 Ig-like domain-containing protein
Q8TCD0 (Q8TCD0_HUMAN)
Light chain subclass: IGKV2 (Kappa)
Homo sapiens 2 chains bound to carbohydrates
Chain H [auth L]:
3 glycosylation body interfaces
Chain J [auth N]:
6 glycosylation body interfaces

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
5 α-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) A, C
6 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 52 (26 molecules) A, B, C, E
7 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 5 (1 molecule) A
8 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) C, E
9 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (1 molecule) C
10 β-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-2)-[β-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-6)]α-D-mannopyranose-(1-6)-[α-D-mannopyranose-(1-3)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 9 (1 molecule) D, F, I, J
[auth D,F,M,N]
11 2-acetamido-2-deoxy-β-D-glucopyranose-(1-2)-[2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)]α-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-β-D-glucopyranose-(1-2)-α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 17 (2 molecules) D, E, F, G, H, I, J
[auth D,E,F,H,L,M,N]
12 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 7 (1 molecule) E, J
[auth E,N]
13 β-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-2)-[β-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-6)]α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 9 (1 molecule) B, F, G
[auth B,F,H]
14 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 21 (21 molecules) A, B, C, D, E, F

Binding sites


Related structures