5VIY (resolution: 6.20 Å)

ID Name Organism Chains bound to carbohydrates
1 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain A:
1 glycosylation head interface
1 glycosylation body interface
2 N-glycosylations
Chain B:
3 glycosylation head interfaces
1 glycosylation body interface
2 N-glycosylations
Chain C:
3 glycosylation head interfaces
1 glycosylation body interface
2 N-glycosylations
2 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain D:
18 glycosylation head interfaces
18 glycosylation body interfaces
17 N-glycosylations
Chain E:
18 glycosylation head interfaces
18 glycosylation body interfaces
17 N-glycosylations
Chain F:
18 glycosylation head interfaces
18 glycosylation body interfaces
17 N-glycosylations
3 Immunoglobulin kappa constant
P01834 (IGKC_HUMAN)
Light chain subclass: IGKV1 (Kappa)
Homo sapiens 2 chains bound to carbohydrates
Chain G:
2 glycosylation body interfaces
Chain I:
1 glycosylation head interface
5 glycosylation body interfaces
4 IgG H chain
S6B291 (S6B291_HUMAN)
Heavy chain subclass: unknown
Homo sapiens 2 chains bound to carbohydrates
Chain H:
2 glycosylation head interfaces
8 glycosylation body interfaces
Chain J:
3 glycosylation head interfaces
7 glycosylation body interfaces
1 unassigned-glycosylation
5 IgG H chain
S6B291 (S6B291_HUMAN)
Heavy chain subclass: unknown
Homo sapiens 3 chains bound to carbohydrates
Chain K:
2 glycosylation head interfaces
7 glycosylation body interfaces
Chain M:
2 glycosylation head interfaces
7 glycosylation body interfaces
Chain O:
2 glycosylation head interfaces
7 glycosylation body interfaces
6 Ig-like domain-containing protein
Q8TCD0 (Q8TCD0_HUMAN)
Light chain subclass: IGKV1 (Kappa)
Homo sapiens 3 chains bound to carbohydrates
Chain L:
1 glycosylation head interface
4 glycosylation body interfaces
Chain N:
1 glycosylation head interface
4 glycosylation body interfaces
Chain P:
1 glycosylation head interface
4 glycosylation body interfaces

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
7 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 45 (9 molecules) A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
8 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 36 (18 molecules) B, C, D, E, F
9 α-D-mannopyranose-(1-3)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 12 (3 molecules) D, E, F, K, M, O
10 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)-α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 18 (3 molecules) D, E, F
11 α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (2 molecules) D, K
12 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 14 (7 molecules) D, E, F
13 α-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) E
14 α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) E
15 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 12 (12 molecules) B, C, D, E, F

Binding sites


Related structures