6XRT (resolution: 3.90 Å)

ID Name Organism Chains bound to carbohydrates
1 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain A [auth G]:
18 glycosylation head interfaces
17 glycosylation body interfaces
17 N-glycosylations
Chain C [auth E]:
18 glycosylation head interfaces
9 glycosylation body interfaces
17 N-glycosylations
Chain D [auth F]:
18 glycosylation head interfaces
10 glycosylation body interfaces
17 N-glycosylations
2 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain B:
3 glycosylation head interfaces
1 glycosylation body interface
2 N-glycosylations
Chain E [auth C]:
3 glycosylation head interfaces
2 N-glycosylations
Chain F [auth A]:
4 glycosylation head interfaces
3 N-glycosylations
3 VRC01.23 Heavy Chain
Heavy chain subclass: IGHV4
Macaca mulatta 1 chain bound to carbohydrates
Chain G [auth H]:
2 glycosylation head interfaces
12 glycosylation body interfaces
4 VRC01.23 Light Chain
Light chain subclass: IGLV1 (Lambda)
Macaca mulatta 1 chain bound to carbohydrates
Chain H [auth L]:
1 glycosylation head interface
8 glycosylation body interfaces

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 20 (10 molecules) A, B, C, D
[auth B,E,F,G]
6 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 14 (4 molecules) A, C, D, H
[auth E,F,G,L]
7 α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)-[α-D-mannopyranose-(1-3)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (1 molecule) A, C, G, H
[auth E,G,H,L]
8 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (2 molecules) C, D, H
[auth E,F,L]
9 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 8 (1 molecule) A, D, G, H
[auth F,G,H,L]
10 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 40 (40 molecules) A, B, C, D, E, F
[auth A,B,C,E,F,G]

Binding sites


Related structures