6CUF (resolution: 4.20 Å)

ID Name Organism Chains bound to carbohydrates
1 vFP1.01 heavy chain
Heavy chain subclass: IGHV1
Mus musculus 0 chain bound to carbohydrates
2 vFP1.01 Light chain
Light chain subclass: IGKV1 (Kappa)
Mus musculus 3 chains bound to carbohydrates
Chain B [auth 4]:
1 glycosylation body interface
Chain J [auth L]:
1 glycosylation body interface
Chain P [auth l]:
1 glycosylation body interface
3 PGT122 Heavy chain
Heavy chain subclass: IGHV4
Homo sapiens 3 chains bound to carbohydrates
Chain C [auth 5]:
2 glycosylation head interfaces
9 glycosylation body interfaces
Chain K [auth M]:
2 glycosylation head interfaces
9 glycosylation body interfaces
Chain Q [auth m]:
2 glycosylation head interfaces
9 glycosylation body interfaces
4 PGT122 light chain
Light chain subclass: IGLV3 (Lambda)
Homo sapiens 3 chains bound to carbohydrates
Chain D [auth 6]:
2 glycosylation head interfaces
5 glycosylation body interfaces
Chain L [auth N]:
2 glycosylation head interfaces
5 glycosylation body interfaces
Chain R [auth n]:
2 glycosylation head interfaces
5 glycosylation body interfaces
5 VRC03 light chain
Light chain subclass: unknown (unknown)
Homo sapiens 3 chains bound to carbohydrates
Chain E [auth 7]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain N [auth R]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain T [auth r]:
1 glycosylation head interface
3 glycosylation body interfaces
6 VRC03 heavy chain
Heavy chain subclass: unknown
Homo sapiens 3 chains bound to carbohydrates
Chain F [auth 8]:
1 glycosylation head interface
4 glycosylation body interfaces
Chain M [auth Q]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain S [auth q]:
1 glycosylation head interface
4 glycosylation body interfaces
7 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain G [auth C]:
2 binding sites
17 glycosylation head interfaces
19 glycosylation body interfaces
15 N-glycosylations
2 unassigned-glycosylations
Chain U [auth 2]:
2 binding sites
17 glycosylation head interfaces
19 glycosylation body interfaces
15 N-glycosylations
3 unassigned-glycosylations
Chain X [auth d]:
2 binding sites
17 glycosylation head interfaces
19 glycosylation body interfaces
15 N-glycosylations
3 unassigned-glycosylations
8 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain H [auth D]:
1 glycosylation head interface
1 N-glycosylation
Chain V [auth A]:
1 glycosylation head interface
1 N-glycosylation
Chain W [auth c]:
1 glycosylation head interface
1 N-glycosylation

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
9 α-D-mannopyranose-(1-3)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 33 (9 molecules) C, D, E, F, G, K, L, M, N, Q, R, S, T, U, X
[auth 2,5,6,7,8,C,M,N,Q,R,d,m,n,q,r]
10 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 18 (9 molecules) G, U, X
[auth 2,C,d]
11 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 30 (15 molecules) B, D, F, G, J, L, M, P, R, S, U, X
[auth 2,4,6,8,C,L,N,Q,d,l,n,q]
12 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 15 (3 molecules) F, G, M, S, U, X
[auth 2,8,C,Q,d,q]
13 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 12 (3 molecules) G, U, X
[auth 2,C,d]
14 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 24 (3 molecules) C, D, G, K, L, Q, R, U, X
[auth 2,5,6,C,M,N,d,m,n]
15 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 9 (9 molecules) G, H, U, V, W, X
[auth 2,A,C,D,c,d]

Binding sites


Related structures