5V8M (resolution: 4.40 Å)

ID Name Organism Chains bound to carbohydrates
1 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain A:
18 glycosylation head interfaces
15 glycosylation body interfaces
17 N-glycosylations
Chain E [auth F]:
18 glycosylation head interfaces
15 glycosylation body interfaces
17 N-glycosylations
Chain I [auth G]:
18 glycosylation head interfaces
15 glycosylation body interfaces
17 N-glycosylations
2 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain B:
3 glycosylation head interfaces
2 N-glycosylations
Chain F [auth I]:
3 glycosylation head interfaces
2 N-glycosylations
Chain J:
3 glycosylation head interfaces
2 N-glycosylations
3 antibody 3BNC117, heavy chain
Heavy chain subclass: unknown
Homo sapiens 3 chains bound to carbohydrates
Chain C [auth H]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain G [auth R]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain K [auth S]:
1 glycosylation head interface
3 glycosylation body interfaces
4 antibody 3BNC117, light chain
Light chain subclass: IGKV1 (Kappa)
Homo sapiens 3 chains bound to carbohydrates
Chain D [auth L]:
2 glycosylation head interfaces
7 glycosylation body interfaces
1 N-glycosylation
Chain H [auth T]:
2 glycosylation head interfaces
7 glycosylation body interfaces
1 N-glycosylation
Chain L [auth U]:
2 glycosylation head interfaces
7 glycosylation body interfaces
1 N-glycosylation

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
5 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (3 molecules) A, B, E, F, I, J
[auth A,B,F,G,I,J]
6 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 48 (24 molecules) A, C, D, E, G, H, I, K, L
[auth A,F,G,H,L,R,S,T,U]
7 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 18 (3 molecules) A, D, E, H, I, L
[auth A,F,G,L,T,U]
8 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 18 (3 molecules) A, D, E, H, I, L
[auth A,F,G,L,T,U]
9 α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)-[α-D-mannopyranose-(1-3)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 9 (3 molecules) A, C, E, G, I, K
[auth A,F,G,H,R,S]
10 α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (3 molecules) A, E, I
[auth A,F,G]
11 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 21 (21 molecules) A, B, E, F, I, J
[auth A,B,F,G,I,J]

Binding sites


Related structures